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    Results: 1 to 20 of 105

    1.

    Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation.

    Berthon J, Cortez D, Forterre P.

    Genome Biol. 2008 Apr 9;9(4):R71.

    PMID:
    18400081
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    When DNA replication and protein synthesis come together.

    Berthon J, Fujikane R, Forterre P.

    Trends Biochem Sci. 2009 Sep;34(9):429-34. Epub 2009 Sep 2.

    PMID:
    19729310
    [PubMed - indexed for MEDLINE]
    3.

    Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea.

    Koonin EV, Mushegian AR, Galperin MY, Walker DR.

    Mol Microbiol. 1997 Aug;25(4):619-37.

    PMID:
    9379893
    [PubMed - indexed for MEDLINE]
    4.

    Predicted highly expressed genes in archaeal genomes.

    Karlin S, Mrázek J, Ma J, Brocchieri L.

    Proc Natl Acad Sci U S A. 2005 May 17;102(20):7303-8. Epub 2005 May 9.

    PMID:
    15883368
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.

    Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV.

    Nucleic Acids Res. 2002 Jan 15;30(2):482-96.

    PMID:
    11788711
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Many nonuniversal archaeal ribosomal proteins are found in conserved gene clusters.

    Wang J, Dasgupta I, Fox GE.

    Archaea. 2009 Apr 28;2(4):241-51.

    PMID:
    19478915
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    The universal Kae1 protein and the associated Bud32 kinase (PRPK), a mysterious protein couple probably essential for genome maintenance in Archaea and Eukarya.

    Hecker A, Graille M, Madec E, Gadelle D, Le Cam E, van Tilbergh H, Forterre P.

    Biochem Soc Trans. 2009 Feb;37(Pt 1):29-35. Erratum in: Biochem Soc Trans. 2009 Apr;37(Pt 2):477.

    PMID:
    19143597
    [PubMed - indexed for MEDLINE]
    8.

    Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

    Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

    Biol Direct. 2007 Nov 27;2:33.

    PMID:
    18042280
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.

    Wolf YI, Rogozin IB, Kondrashov AS, Koonin EV.

    Genome Res. 2001 Mar;11(3):356-72.

    PMID:
    11230160
    [PubMed - indexed for MEDLINE]
    Free Article
    10.

    DNA repair systems in archaea: mementos from the last universal common ancestor?

    DiRuggiero J, Brown JR, Bogert AP, Robb FT.

    J Mol Evol. 1999 Oct;49(4):474-84.

    PMID:
    10486005
    [PubMed - indexed for MEDLINE]
    13.

    The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements.

    Krupovic M, Gribaldo S, Bamford DH, Forterre P.

    Mol Biol Evol. 2010 Dec;27(12):2716-32. Epub 2010 Jun 25.

    PMID:
    20581330
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Archeal DNA replication: eukaryal proteins in a bacterial context.

    Grabowski B, Kelman Z.

    Annu Rev Microbiol. 2003;57:487-516. Review.

    PMID:
    14527289
    [PubMed - indexed for MEDLINE]
    15.

    A korarchaeal genome reveals insights into the evolution of the Archaea.

    Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP, Brochier-Armanet C, Kunin V, Anderson I, Lapidus A, Goltsman E, Barry K, Koonin EV, Hugenholtz P, Kyrpides N, Wanner G, Richardson P, Keller M, Stetter KO.

    Proc Natl Acad Sci U S A. 2008 Jun 10;105(23):8102-7. Epub 2008 Jun 5.

    PMID:
    18535141
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics.

    Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, Bashirzadeh R, Blakely D, Cook R, Gilbert K, Harrison D, Hoang L, Keagle P, Lumm W, Pothier B, Qiu D, Spadafora R, Vicaire R, Wang Y, Wierzbowski J, Gibson R, Jiwani N, Caruso A, Bush D, Reeve JN, et al.

    J Bacteriol. 1997 Nov;179(22):7135-55.

    PMID:
    9371463
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

    Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

    Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

    PMID:
    14759257
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Archaeal DNA replication and repair.

    Kelman Z, White MF.

    Curr Opin Microbiol. 2005 Dec;8(6):669-76. Epub 2005 Oct 20. Review.

    PMID:
    16242991
    [PubMed - indexed for MEDLINE]
    19.

    Archaeal phylogeny based on proteins of the transcription and translation machineries: tackling the Methanopyrus kandleri paradox.

    Brochier C, Forterre P, Gribaldo S.

    Genome Biol. 2004;5(3):R17. Epub 2004 Feb 26.

    PMID:
    15003120
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    The information transfer system of halophilic archaea.

    Capes MD, Coker JA, Gessler R, Grinblat-Huse V, DasSarma SL, Jacob CG, Kim JM, DasSarma P, DasSarma S.

    Plasmid. 2011 Mar;65(2):77-101. Epub 2010 Nov 19. Review.

    PMID:
    21094181
    [PubMed - indexed for MEDLINE]

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