PubMed

A scoring matrix approach to detecting miRNA target sites.

Moxon S, Moulton V, Kim JT.

Algorithms Mol Biol. 2008 Mar 31;3:3.PMID: 18377655 [PubMed]Related articlesFree article

MiRTif: a support vector machine-based microRNA target interaction filter.

Yang Y, Wang YP, Li KB.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S4.PMID: 19091027 [PubMed - indexed for MEDLINE]Related articlesFree article

miRecords: an integrated resource for microRNA-target interactions.

Xiao F, Zuo Z, Cai G, Kang S, Gao X, Li T.

Nucleic Acids Res. 2009 Jan;37(Database issue):D105-10. Epub 2008 Nov 7.PMID: 18996891 [PubMed - indexed for MEDLINE]Related articlesFree article

mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.

Hammell M, Long D, Zhang L, Lee A, Carmack CS, Han M, Ding Y, Ambros V.

Nat Methods. 2008 Sep;5(9):813-9.PMID: 19160516 [PubMed - indexed for MEDLINE]Related articles

Predicting microRNA targets in time-series microarray experiments via functional data analysis.

Parker BJ, Wen J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S32.PMID: 19208133 [PubMed - indexed for MEDLINE]Related articlesFree article

New scoring schema for finding motifs in DNA Sequences.

Zare-Mirakabad F, Ahrabian H, Sadeghi M, Nowzari-Dalini A, Goliaei B.

BMC Bioinformatics. 2009 Mar 20;10:93.PMID: 19302709 [PubMed - indexed for MEDLINE]Related articlesFree article

DIANA-microT web server: elucidating microRNA functions through target prediction.

Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG.

Nucleic Acids Res. 2009 Jul 1;37(Web Server issue):W273-6. Epub 2009 Apr 30.PMID: 19406924 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroPC (microPC): A comprehensive resource for predicting and comparing plant microRNAs.

Mhuantong W, Wichadakul D.

BMC Genomics. 2009 Aug 7;10:366.PMID: 19660144 [PubMed - indexed for MEDLINE]Related articlesFree article

Naïve Bayes for microRNA target predictions--machine learning for microRNA targets.

Yousef M, Jung S, Kossenkov AV, Showe LC, Showe MK.

Bioinformatics. 2007 Nov 15;23(22):2987-92. Epub 2007 Oct 8.PMID: 17925304 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroRNA target prediction by expression analysis of host genes.

Gennarino VA, Sardiello M, Avellino R, Meola N, Maselli V, Anand S, Cutillo L, Ballabio A, Banfi S.

Genome Res. 2009 Mar;19(3):481-90. Epub 2008 Dec 16.PMID: 19088304 [PubMed - indexed for MEDLINE]Related articlesFree article

Immunopurification of Ago1 miRNPs selects for a distinct class of microRNA targets.

Hong X, Hammell M, Ambros V, Cohen SM.

Proc Natl Acad Sci U S A. 2009 Sep 1;106(35):15085-90. Epub 2009 Aug 18.PMID: 19706460 [PubMed - indexed for MEDLINE]Related articlesFree article

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.

Addo-Quaye C, Miller W, Axtell MJ.

Bioinformatics. 2009 Jan 1;25(1):130-1. Epub 2008 Nov 18.PMID: 19017659 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH.

Ragan C, Cloonan N, Grimmond SM, Zuker M, Ragan MA.

PLoS One. 2009 May 29;4(5):e5745. Erratum in: PLoS One. 2009;4(7). doi: 10.1371/annotation/e0842765-3cae-4737-8b5b-96aeb12d7fb5. PMID: 19478946 [PubMed - indexed for MEDLINE]Related articlesFree article

Selection and mutation on microRNA target sequences during rice evolution.

Guo X, Gui Y, Wang Y, Zhu QH, Helliwell C, Fan L.

BMC Genomics. 2008 Oct 2;9:454.PMID: 18831738 [PubMed - indexed for MEDLINE]Related articlesFree article

A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions.

Creighton CJ, Nagaraja AK, Hanash SM, Matzuk MM, Gunaratne PH.

RNA. 2008 Nov;14(11):2290-6. Epub 2008 Sep 23.PMID: 18812437 [PubMed - indexed for MEDLINE]Related articlesFree article

Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins.

Durek P, Schudoma C, Weckwerth W, Selbig J, Walther D.

BMC Bioinformatics. 2009 Apr 21;10:117.PMID: 19383128 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting RNA-binding sites of proteins using support vector machines and evolutionary information.

Cheng CW, Su EC, Hwang JK, Sung TY, Hsu WL.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S6.PMID: 19091029 [PubMed - indexed for MEDLINE]Related articlesFree article

Progress in miRNA target prediction and identification.

Xia W, Cao G, Shao N.

Sci China C Life Sci. 2009 Dec;52(12):1123-30. Epub 2009 Dec 17.PMID: 20016969 [PubMed - in process]Related articles

HuMiTar: a sequence-based method for prediction of human microRNA targets.

Ruan J, Chen H, Kurgan L, Chen K, Kang C, Pu P.

Algorithms Mol Biol. 2008 Dec 22;3:16.PMID: 19102780 [PubMed]Related articlesFree article

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.

German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ.

Nat Biotechnol. 2008 Aug;26(8):941-6. Epub 2008 Jun 9.PMID: 18542052 [PubMed - indexed for MEDLINE]Related articles