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BioSAVE: display of scored annotation within a sequence context.

Pollock RF, Adryan B.

BMC Bioinformatics. 2008 Mar 20;9:157.PMID: 18366701 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

BMC Bioinformatics. 2005 Apr 12;6:95.PMID: 15826305 [PubMed - indexed for MEDLINE]Related articlesFree article

gff2aplot: Plotting sequence comparisons.

Abril JF, Guigó R, Wiehe T.

Bioinformatics. 2003 Dec 12;19(18):2477-9.PMID: 14668236 [PubMed - indexed for MEDLINE]Related articlesFree article

G-InforBIO: integrated system for microbial genomics.

Tanaka N, Abe T, Miyazaki S, Sugawara H.

BMC Bioinformatics. 2006 Aug 4;7:368.PMID: 16887044 [PubMed - indexed for MEDLINE]Related articlesFree article

PROMPT: a protein mapping and comparison tool.

Schmidt T, Frishman D.

BMC Bioinformatics. 2006 Jul 4;7:331.PMID: 16817977 [PubMed - indexed for MEDLINE]Related articlesFree article

Dasty and UniProt DAS: a perfect pair for protein feature visualization.

Jones P, Vinod N, Down T, Hackmann A, Kahari A, Kretschmann E, Quinn A, Wieser D, Hermjakob H, Apweiler R.

Bioinformatics. 2005 Jul 15;21(14):3198-9. Epub 2005 May 19.PMID: 15905273 [PubMed - indexed for MEDLINE]Related articlesFree article

SinicView: a visualization environment for comparisons of multiple nucleotide sequence alignment tools.

Shih AC, Lee DT, Lin L, Peng CL, Chen SH, Wu YW, Wong CY, Chou MY, Shiao TC, Hsieh MF.

BMC Bioinformatics. 2006 Mar 2;7:103.PMID: 16509994 [PubMed - indexed for MEDLINE]Related articlesFree article

ABC: software for interactive browsing of genomic multiple sequence alignment data.

Cooper GM, Singaravelu SA, Sidow A.

BMC Bioinformatics. 2004 Dec 8;5:192.PMID: 15588288 [PubMed - indexed for MEDLINE]Related articlesFree article

BLMT: statistical sequence analysis using N-grams.

Ganapathiraju M, Manoharan V, Klein-Seetharaman J.

Appl Bioinformatics. 2004;3(2-3):193-200.PMID: 15693744 [PubMed - indexed for MEDLINE]Related articles

GenomeMatcher: a graphical user interface for DNA sequence comparison.

Ohtsubo Y, Ikeda-Ohtsubo W, Nagata Y, Tsuda M.

BMC Bioinformatics. 2008 Sep 16;9:376.PMID: 18793444 [PubMed - indexed for MEDLINE]Related articlesFree article

Panta rhei (QAlign2): an open graphical environment for sequence analysis.

Sammeth M, Griebel T, Tille F, Stoye J.

Bioinformatics. 2006 Apr 1;22(7):889-90. Epub 2006 Jan 17.PMID: 16418234 [PubMed - indexed for MEDLINE]Related articlesFree article

VisRD--visual recombination detection.

Forslund K, Huson DH, Moulton V.

Bioinformatics. 2004 Dec 12;20(18):3654-5. Epub 2004 Jul 9.PMID: 15247095 [PubMed - indexed for MEDLINE]Related articlesFree article

Composition Profiler: a tool for discovery and visualization of amino acid composition differences.

Vacic V, Uversky VN, Dunker AK, Lonardi S.

BMC Bioinformatics. 2007 Jun 19;8:211.PMID: 17578581 [PubMed - indexed for MEDLINE]Related articlesFree article

MultiPipMaker: comparative alignment server for multiple DNA sequences.

Elnitski L, Riemer C, Burhans R, Hardison R, Miller W.

Curr Protoc Bioinformatics. 2005 Apr;Chapter 10:Unit10.4.PMID: 18428743 [PubMed - indexed for MEDLINE]Related articles

ACT: the Artemis Comparison Tool.

Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J.

Bioinformatics. 2005 Aug 15;21(16):3422-3. Epub 2005 Jun 23.PMID: 15976072 [PubMed - indexed for MEDLINE]Related articlesFree article

Using Apollo to browse and edit genome annotations.

Misra S, Harris N.

Curr Protoc Bioinformatics. 2006 Jan;Chapter 9:Unit 9.5.PMID: 18428771 [PubMed - indexed for MEDLINE]Related articles

Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D.

Porollo A, Meller J.

BMC Bioinformatics. 2007 Aug 29;8:316.PMID: 17727718 [PubMed - indexed for MEDLINE]Related articlesFree article

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.

Faith JJ, Olson AJ, Gardner TS, Sachidanandam R.

BMC Bioinformatics. 2007 Sep 18;8:344.PMID: 17877794 [PubMed - indexed for MEDLINE]Related articlesFree article

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.

Sonnhammer EL, Durbin R.

Gene. 1995 Dec 29;167(1-2):GC1-10.PMID: 8566757 [PubMed - indexed for MEDLINE]Related articles

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts.

Choi K, Kim S.

BMC Bioinformatics. 2008 Mar 6;9:145.PMID: 18325116 [PubMed - indexed for MEDLINE]Related articlesFree article