PubMed

Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series.

Rogozin IB, Thomson K, Csürös M, Carmel L, Koonin EV.

Biol Direct. 2008 Mar 17;3:7.PMID: 18346278 [PubMed - indexed for MEDLINE]Related articlesFree article

Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements.

Rogozin IB, Wolf YI, Carmel L, Koonin EV.

Mol Biol Evol. 2007 Apr;24(4):1080-90. Epub 2007 Feb 13.PMID: 17299026 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of rare amino acid replacements supports the Coelomata clade.

Rogozin IB, Wolf YI, Carmel L, Koonin EV.

Mol Biol Evol. 2007 Dec;24(12):2594-7. Epub 2007 Oct 5.PMID: 17921482 [PubMed - indexed for MEDLINE]Related articlesFree article

Rare coding sequence changes are consistent with Ecdysozoa, not Coelomata.

Irimia M, Maeso I, Penny D, Garcia-Fernàndez J, Roy SW.

Mol Biol Evol. 2007 Aug;24(8):1604-7. Epub 2007 May 24.PMID: 17525471 [PubMed - indexed for MEDLINE]Related articlesFree article

Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis.

Wolf YI, Rogozin IB, Koonin EV.

Genome Res. 2004 Jan;14(1):29-36.PMID: 14707168 [PubMed - indexed for MEDLINE]Related articlesFree article

On combining protein sequences and nucleic acid sequences in phylogenetic analysis: the homeobox protein case.

Agosti D, Jacobs D, DeSalle R.

Cladistics. 1996;12:65-82.PMID: 11541749 [PubMed - indexed for MEDLINE]Related articles

Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation.

Zheng J, Rogozin IB, Koonin EV, Przytycka TM.

Mol Biol Evol. 2007 Nov;24(11):2583-92. Epub 2007 Sep 24.PMID: 17893400 [PubMed - indexed for MEDLINE]Related articlesFree article

PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis.

Wang HC, Susko E, Roger AJ.

BMC Evol Biol. 2009 Sep 8;9:225.PMID: 19737395 [PubMed - indexed for MEDLINE]Related articlesFree article

Systematic searches for molecular synapomorphies in model metazoan genomes give some support for Ecdysozoa after accounting for the idiosyncrasies of Caenorhabditis elegans.

Copley RR, Aloy P, Russell RB, Telford MJ.

Evol Dev. 2004 May-Jun;6(3):164-9.PMID: 15099303 [PubMed - indexed for MEDLINE]Related articles

Evolutionary history of the alpha2,8-sialyltransferase (ST8Sia) gene family: tandem duplications in early deuterostomes explain most of the diversity found in the vertebrate ST8Sia genes.

Harduin-Lepers A, Petit D, Mollicone R, Delannoy P, Petit JM, Oriol R.

BMC Evol Biol. 2008 Sep 23;8:258.PMID: 18811928 [PubMed - indexed for MEDLINE]Related articlesFree article

Frequent and widespread parallel evolution of protein sequences.

Rokas A, Carroll SB.

Mol Biol Evol. 2008 Sep;25(9):1943-53. Epub 2008 Jun 25.PMID: 18583353 [PubMed - indexed for MEDLINE]Related articlesFree article

Granule-bound starch synthase: structure, function, and phylogenetic utility.

Mason-Gamer RJ, Weil CF, Kellogg EA.

Mol Biol Evol. 1998 Dec;15(12):1658-73.PMID: 9866201 [PubMed - indexed for MEDLINE]Related articlesFree article

[Foundations of the new phylogenetics]

Pavlinov IIa.

Zh Obshch Biol. 2004 Jul-Aug;65(4):334-66. Russian. PMID: 15490579 [PubMed - indexed for MEDLINE]Related articles

Evolution of aminoacyl-tRNA synthetases--analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events.

Wolf YI, Aravind L, Grishin NV, Koonin EV.

Genome Res. 1999 Aug;9(8):689-710.PMID: 10447505 [PubMed - indexed for MEDLINE]Related articlesFree article

Patterns and relative rates of nucleotide and insertion/deletion evolution at six chloroplast intergenic regions in new world species of the Lecythidaceae.

Hamilton MB, Braverman JM, Soria-Hernanz DF.

Mol Biol Evol. 2003 Oct;20(10):1710-21. Epub 2003 Jun 27.PMID: 12832633 [PubMed - indexed for MEDLINE]Related articlesFree article

Temporal pattern of loss/persistence of duplicate genes involved in signal transduction and metabolic pathways after teleost-specific genome duplication.

Sato Y, Hashiguchi Y, Nishida M.

BMC Evol Biol. 2009 Jun 5;9:127.PMID: 19500364 [PubMed - indexed for MEDLINE]Related articlesFree article

The evolution of protostome GATA factors: molecular phylogenetics, synteny, and intron/exon structure reveal orthologous relationships.

Gillis WQ, Bowerman BA, Schneider SQ.

BMC Evol Biol. 2008 Apr 15;8:112.PMID: 18412965 [PubMed - indexed for MEDLINE]Related articlesFree article

THE FATE OF THE GIANT CELLS IN HEALING TUBERCULOUS TISSUE, AS OBSERVED IN A CASE OF HEALING TUBERCULOUS MENINGITIS.

Hektoen L.

J Exp Med. 1898 Jan 1;3(1):21-52.PMID: 19866866 [PubMed - as supplied by publisher]Related articlesFree article

Using genomic data to unravel the root of the placental mammal phylogeny.

Murphy WJ, Pringle TH, Crider TA, Springer MS, Miller W.

Genome Res. 2007 Apr;17(4):413-21. Epub 2007 Feb 23.PMID: 17322288 [PubMed - indexed for MEDLINE]Related articlesFree article

A proper study for mankind: Analogies from the Papionin monkeys and their implications for human evolution.

Jolly CJ.

Am J Phys Anthropol. 2001;Suppl 33:177-204. Review.PMID: 11786995 [PubMed - indexed for MEDLINE]Related articles