PubMed

The Amborella genome: an evolutionary reference for plant biology.

Soltis DE, Albert VA, Leebens-Mack J, Palmer JD, Wing RA, dePamphilis CW, Ma H, Carlson JE, Altman N, Kim S, Wall PK, Zuccolo A, Soltis PS.

Genome Biol. 2008;9(3):402. Epub 2008 Mar 10.PMID: 18341710 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

Goremykin VV, Hirsch-Ernst KI, Wolfl S, Hellwig FH.

Mol Biol Evol. 2003 Sep;20(9):1499-505. Epub 2003 Jun 27.PMID: 12832641 [PubMed - indexed for MEDLINE]Related articlesFree article

The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes.

Qiu YL, Lee J, Bernasconi-Quadroni F, Soltis DE, Soltis PS, Zanis M, Zimmer EA, Chen Z, Savolainen V, Chase MW.

Nature. 1999 Nov 25;402(6760):404-7. Erratum in: Nature 2000 May 4;405(6782):101. PMID: 10586879 [PubMed - indexed for MEDLINE]Related articles

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

Stefanović S, Rice DW, Palmer JD.

BMC Evol Biol. 2004 Sep 28;4(1):35.PMID: 15453916 [PubMed - indexed for MEDLINE]Related articlesFree article

Synteny and collinearity in plant genomes.

Tang H, Bowers JE, Wang X, Ming R, Alam M, Paterson AH.

Science. 2008 Apr 25;320(5875):486-8.PMID: 18436778 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW.

Mol Biol Evol. 2005 Oct;22(10):1948-63. Epub 2005 Jun 8.PMID: 15944438 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics.

Soltis DE, Albert VA, Savolainen V, Hilu K, Qiu YL, Chase MW, Farris JS, Stefanović S, Rice DW, Palmer JD, Soltis PS.

Trends Plant Sci. 2004 Oct;9(10):477-83. Review.PMID: 15465682 [PubMed - indexed for MEDLINE]Related articles

The root of the angiosperms revisited.

Zanis MJ, Soltis DE, Soltis PS, Mathews S, Donoghue MJ.

Proc Natl Acad Sci U S A. 2002 May 14;99(10):6848-53.PMID: 12011443 [PubMed - indexed for MEDLINE]Related articlesFree article

Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny.

Barkman TJ, Chenery G, McNeal JR, Lyons-Weiler J, Ellisens WJ, Moore G, Wolfe AD, dePamphilis CW.

Proc Natl Acad Sci U S A. 2000 Nov 21;97(24):13166-71.PMID: 11069280 [PubMed - indexed for MEDLINE]Related articlesFree article

Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organization and phylogenetic relationships to other angiosperms.

Mardanov AV, Ravin NV, Kuznetsov BB, Samigullin TH, Antonov AS, Kolganova TV, Skyabin KG.

J Mol Evol. 2008 Jun;66(6):555-64. Epub 2008 May 8.PMID: 18463914 [PubMed - indexed for MEDLINE]Related articles

Plant systematics in the age of genomics.

Daly DC, Cameron KM, Stevenson DW.

Plant Physiol. 2001 Dec;127(4):1328-33. Review. No abstract available. PMID: 11743069 [PubMed - indexed for MEDLINE]Related articlesFree article

Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae).

Hansen DR, Dastidar SG, Cai Z, Penaflor C, Kuehl JV, Boore JL, Jansen RK.

Mol Phylogenet Evol. 2007 Nov;45(2):547-63. Epub 2007 Jun 16.PMID: 17644003 [PubMed - indexed for MEDLINE]Related articles

Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella.

Bergthorsson U, Richardson AO, Young GJ, Goertzen LR, Palmer JD.

Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17747-52. Epub 2004 Dec 14.PMID: 15598737 [PubMed - indexed for MEDLINE]Related articlesFree article

Hydatellaceae identified as a new branch near the base of the angiosperm phylogenetic tree.

Saarela JM, Rai HS, Doyle JA, Endress PK, Mathews S, Marchant AD, Briggs BG, Graham SW.

Nature. 2007 Mar 15;446(7133):312-5.PMID: 17361182 [PubMed - indexed for MEDLINE]Related articles

Genome size and recombination in angiosperms: a second look.

Ross-Ibarra J.

J Evol Biol. 2007 Mar;20(2):800-6.PMID: 17305845 [PubMed - indexed for MEDLINE]Related articles

Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants.

Drouin G, Daoud H, Xia J.

Mol Phylogenet Evol. 2008 Dec;49(3):827-31. Epub 2008 Sep 21.PMID: 18838124 [PubMed - indexed for MEDLINE]Related articles

Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution.

Martin W, Deusch O, Stawski N, Grünheit N, Goremykin V.

Trends Plant Sci. 2005 May;10(5):203-9. Review.PMID: 15882651 [PubMed - indexed for MEDLINE]Related articles

Evolutionary origins of the endosperm in flowering plants.

Baroux C, Spillane C, Grossniklaus U.

Genome Biol. 2002 Aug 30;3(9):reviews1026. Epub 2002 Aug 30. Review.PMID: 12225592 [PubMed - indexed for MEDLINE]Related articlesFree article

Recent progress in reconstructing angiosperm phylogeny.

Kuzoff RK, Gasser CS.

Trends Plant Sci. 2000 Aug;5(8):330-6. Review.PMID: 10908877 [PubMed - indexed for MEDLINE]Related articles

Removal of noisy characters from chloroplast genome-scale data suggests revision of phylogenetic placements of Amborella and Ceratophyllum.

Goremykin VV, Viola R, Hellwig FH.

J Mol Evol. 2009 Mar;68(3):197-204. Epub 2009 Feb 27.PMID: 19247564 [PubMed - indexed for MEDLINE]Related articles