PubMed

Analyzing stochastic transcription to elucidate the nucleoid's organization.

Riva A, Carpentier AS, Barloy-Hubler F, Chéron A, Hénaut A.

BMC Genomics. 2008 Mar 10;9:125.PMID: 18331647 [PubMed - indexed for MEDLINE]Related articlesFree article

Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data.

Carpentier AS, Torrésani B, Grossmann A, Hénaut A.

BMC Genomics. 2005 Jun 6;6(1):84.PMID: 15938745 [PubMed - indexed for MEDLINE]Related articlesFree article

Validation of an algorithm for delay stochastic simulation of transcription and translation in prokaryotic gene expression.

Roussel MR, Zhu R.

Phys Biol. 2006 Dec 8;3(4):274-84.PMID: 17200603 [PubMed - indexed for MEDLINE]Related articles

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli.

Jeong KS, Ahn J, Khodursky AB.

Genome Biol. 2004;5(11):R86. Epub 2004 Oct 27.PMID: 15535862 [PubMed - indexed for MEDLINE]Related articlesFree article

Stochastic fluctuations in epidemics on networks.

Simões M, Telo da Gama MM, Nunes A.

J R Soc Interface. 2008 May 6;5(22):555-66.PMID: 17911052 [PubMed - indexed for MEDLINE]Related articlesFree article

Multiple gene genealogical analyses reveal both common and distinct population genetic patterns among replicons in the nitrogen-fixing bacterium Sinorhizobium meliloti.

Sun S, Guo H, Xu J.

Microbiology. 2006 Nov;152(Pt 11):3245-59.PMID: 17074896 [PubMed - indexed for MEDLINE]Related articlesFree article

[Transcriptional regulation of noeAB from Sinorhizobium meliloti 042BM]

Du BH, Wang L, Li XH, Qi SW, Yang SS.

Wei Sheng Wu Xue Bao. 2005 Jun;45(3):339-43. Chinese. PMID: 15989222 [PubMed - indexed for MEDLINE]Related articles

Stochastic mRNA synthesis in mammalian cells.

Raj A, Peskin CS, Tranchina D, Vargas DY, Tyagi S.

PLoS Biol. 2006 Oct;4(10):e309.PMID: 17048983 [PubMed - indexed for MEDLINE]Related articlesFree article

Stochastic simulations of the repressilator circuit.

Loinger A, Biham O.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Nov;76(5 Pt 1):051917. Epub 2007 Nov 21.PMID: 18233697 [PubMed - indexed for MEDLINE]Related articles

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011.

Valverde C, Livny J, Schlüter JP, Reinkensmeier J, Becker A, Parisi G.

BMC Genomics. 2008 Sep 16;9:416.PMID: 18793445 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system.

Mao C, Evans C, Jensen RV, Sobral BW.

BMC Microbiol. 2008 May 2;8:72.PMID: 18454850 [PubMed - indexed for MEDLINE]Related articlesFree article

Stochastic simulations of genetic switch systems.

Loinger A, Lipshtat A, Balaban NQ, Biham O.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Feb;75(2 Pt 1):021904. Epub 2007 Feb 9.PMID: 17358364 [PubMed - indexed for MEDLINE]Related articles

Effects of coupling strength and space on the dynamics of coupled toggle switches in stochastic gene networks with multiple-delayed reactions.

Ribeiro AS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jun;75(6 Pt 1):061903. Epub 2007 Jun 4.PMID: 17677296 [PubMed - indexed for MEDLINE]Related articles

Mean-field versus stochastic models for transcriptional regulation.

Blossey R, Giuraniuc CV.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Sep;78(3 Pt 1):031909. Epub 2008 Sep 10.PMID: 18851067 [PubMed - indexed for MEDLINE]Related articles

Quantitative insights into stochastic monoallelic expression of cytokine genes.

Paixão T, Carvalho TP, Calado DP, Carneiro J.

Immunol Cell Biol. 2007 Jun;85(4):315-22. Epub 2007 Apr 17.PMID: 17438562 [PubMed - indexed for MEDLINE]Related articles

Characterization and expression patterns of Sinorhizobium meliloti tmRNA (ssrA).

Ulvé VM, Chéron A, Trautwetter A, Fontenelle C, Barloy-Hubler F.

FEMS Microbiol Lett. 2007 Apr;269(1):117-23. Epub 2007 Jan 15.PMID: 17241239 [PubMed - indexed for MEDLINE]Related articles

Strong negative self regulation of prokaryotic transcription factors increases the intrinsic noise of protein expression.

Stekel DJ, Jenkins DJ.

BMC Syst Biol. 2008 Jan 18;2:6.PMID: 18205926 [PubMed - indexed for MEDLINE]Related articlesFree article

Synthetic gene brushes: a structure-function relationship.

Buxboim A, Daube SS, Bar-Ziv R.

Mol Syst Biol. 2008;4:181. Epub 2008 Apr 15.PMID: 18414482 [PubMed - indexed for MEDLINE]Related articlesFree article

The mean and noise of stochastic gene transcription.

Tang M.

J Theor Biol. 2008 Jul 21;253(2):271-80. Epub 2008 Mar 27.PMID: 18472111 [PubMed - indexed for MEDLINE]Related articles