PubMed

Pybel: a Python wrapper for the OpenBabel cheminformatics toolkit.

O'Boyle NM, Morley C, Hutchison GR.

Chem Cent J. 2008 Mar 9;2:5.PMID: 18328109 [PubMed]Free PMC ArticleFree textRelated citations

Cinfony--combining Open Source cheminformatics toolkits behind a common interface.

O'Boyle NM, Hutchison GR.

Chem Cent J. 2008 Dec 3;2:24.PMID: 19055766 [PubMed]Free PMC ArticleFree textRelated citations

p3d--Python module for structural bioinformatics.

Fufezan C, Specht M.

BMC Bioinformatics. 2009 Aug 21;10:258.PMID: 19698094 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

A comparison of common programming languages used in bioinformatics.

Fourment M, Gillings MR.

BMC Bioinformatics. 2008 Feb 5;9:82.PMID: 18251993 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

DataViewer3D: An Open-Source, Cross-Platform Multi-Modal Neuroimaging Data Visualization Tool.

Gouws A, Woods W, Millman R, Morland A, Green G.

Front Neuroinformatics. 2009;3:9. Epub 2009 Mar 27.PMID: 19352444 [PubMed - in process]Free PMC ArticleFree textRelated citations

PYCHEM: a multivariate analysis package for python.

Jarvis RM, Broadhurst D, Johnson H, O'Boyle NM, Goodacre R.

Bioinformatics. 2006 Oct 15;22(20):2565-6. Epub 2006 Jul 31.PMID: 16882648 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

PyMOOSE: Interoperable Scripting in Python for MOOSE.

Ray S, Bhalla US.

Front Neuroinformatics. 2008;2:6. Epub 2008 Dec 19.PMID: 19129924 [PubMed - in process]Free PMC ArticleFree textRelated citations

STXMPy: a new software package for automated region of interest selection and statistical analysis of XANES data.

Haraszti T, Grunze M, Anderson MG.

Chem Cent J. 2010 Jun 4;4:11.PMID: 20525317 [PubMed - in process]Free PMC ArticleFree textRelated citations

The Bioperl toolkit: Perl modules for the life sciences.

Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehväslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka E, Wilkinson MD, Birney E.

Genome Res. 2002 Oct;12(10):1611-8.PMID: 12368254 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26.PMID: 18201381 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

EMXtalOrg: an EM tilt data organization and processing system.

McDermott J, Barklis E.

Ultramicroscopy. 2002 Oct;93(1):11-7.PMID: 12380647 [PubMed - indexed for MEDLINE]Related citations

MolTalk--a programming library for protein structures and structure analysis.

Diemand AV, Scheib H.

BMC Bioinformatics. 2004 Apr 19;5:39.PMID: 15096277 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

AnnotationSketch: a genome annotation drawing library.

Steinbiss S, Gremme G, Schärfer C, Mader M, Kurtz S.

Bioinformatics. 2009 Feb 15;25(4):533-4. Epub 2008 Dec 23.PMID: 19106120 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

PyEvolve: a toolkit for statistical modelling of molecular evolution.

Butterfield A, Vedagiri V, Lang E, Lawrence C, Wakefield MJ, Isaev A, Huttley GA.

BMC Bioinformatics. 2004 Jan 5;5:1.PMID: 14706121 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Informatics in radiology (infoRAD): portable toolkit for providing straightforward access to medical image data.

Sadleir RJ, Whelan PF, MacMathuna P, Fenlon HM.

Radiographics. 2004 Jul-Aug;24(4):1193-202.PMID: 15256639 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.PMID: 15819992 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

multiplierz: an extensible API based desktop environment for proteomics data analysis.

Parikh JR, Askenazi M, Ficarro SB, Cashorali T, Webber JT, Blank NC, Zhang Y, Marto JA.

BMC Bioinformatics. 2009 Oct 29;10:364.PMID: 19874609 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ.

Bioinformatics. 2009 Jun 1;25(11):1422-3. Epub 2009 Mar 20.PMID: 19304878 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

The Ensemble/Legacy Chimera extension: standardized user and programmer interface to molecular Ensemble data and Legacy modeling programs.

Konerding DE.

Pac Symp Biocomput. 2000:254-65.PMID: 10902174 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

CDK-Taverna: an open workflow environment for cheminformatics.

Kuhn T, Willighagen EL, Zielesny A, Steinbeck C.

BMC Bioinformatics. 2010 Mar 29;11:159.PMID: 20346188 [PubMed - in process]Free PMC ArticleFree textRelated citations