PubMed

OptCircuit: an optimization based method for computational design of genetic circuits.

Dasika MS, Maranas CD.

BMC Syst Biol. 2008 Mar 3;2:24.PMID: 18315885 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of pairwise gene interaction using threshold logic.

Gowda T, Vrudhula S, Kim S.

Ann N Y Acad Sci. 2009 Mar;1158:276-86.PMID: 19348649 [PubMed - indexed for MEDLINE]Related articles

Predicting genetic interactions with random walks on biological networks.

Chipman KC, Singh AK.

BMC Bioinformatics. 2009 Jan 12;10:17.PMID: 19138426 [PubMed - indexed for MEDLINE]Related articlesFree article

Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes.

Sotiropoulos V, Kaznessis YN.

BMC Syst Biol. 2007 Jan 9;1:7.PMID: 17408514 [PubMed - indexed for MEDLINE]Related articlesFree article

[Progress in research of genetic circuits]

Wang W, Chen Z.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2007 Apr;24(2):460-2. Review. Chinese. PMID: 17591282 [PubMed - indexed for MEDLINE]Related articles

Studying genetic regulatory networks at the molecular level: delayed reaction stochastic models.

Zhu R, Ribeiro AS, Salahub D, Kauffman SA.

J Theor Biol. 2007 Jun 21;246(4):725-45. Epub 2007 Feb 6.PMID: 17350653 [PubMed - indexed for MEDLINE]Related articles

Evolutionary programming as a platform for in silico metabolic engineering.

Patil KR, Rocha I, Förster J, Nielsen J.

BMC Bioinformatics. 2005 Dec 23;6:308.PMID: 16375763 [PubMed - indexed for MEDLINE]Related articlesFree article

Neuromorphic hardware databases for exploring structure-function relationships in the brain.

Breslin C, O'Lenskie A.

Philos Trans R Soc Lond B Biol Sci. 2001 Aug 29;356(1412):1249-58. Review.PMID: 11545701 [PubMed - indexed for MEDLINE]Related articlesFree article

A fast, robust and tunable synthetic gene oscillator.

Stricker J, Cookson S, Bennett MR, Mather WH, Tsimring LS, Hasty J.

Nature. 2008 Nov 27;456(7221):516-9. Epub 2008 Oct 29.PMID: 18971928 [PubMed - indexed for MEDLINE]Related articles

Genetdes: automatic design of transcriptional networks.

Rodrigo G, Carrera J, Jaramillo A.

Bioinformatics. 2007 Jul 15;23(14):1857-8. Epub 2007 May 7.PMID: 17485427 [PubMed - indexed for MEDLINE]Related articlesFree article

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225.PMID: 18447957 [PubMed - indexed for MEDLINE]Related articlesFree article

Toggles and oscillators: new genetic circuit designs.

Judd EM, Laub MT, McAdams HH.

Bioessays. 2000 Jun;22(6):507-9. Review.PMID: 10842304 [PubMed - indexed for MEDLINE]Related articles

Mammalian synthetic biology: engineering of sophisticated gene networks.

Greber D, Fussenegger M.

J Biotechnol. 2007 Jul 15;130(4):329-45. Epub 2007 May 24. Review.PMID: 17602777 [PubMed - indexed for MEDLINE]Related articles

Function approximation approach to the inference of reduced NGnet models of genetic networks.

Kimura S, Sonoda K, Yamane S, Maeda H, Matsumura K, Hatakeyama M.

BMC Bioinformatics. 2008 Jan 14;9:23.PMID: 18194576 [PubMed - indexed for MEDLINE]Related articlesFree article

A synthetic biology challenge: making cells compute.

Tan C, Song H, Niemi J, You L.

Mol Biosyst. 2007 May;3(5):343-53. Epub 2007 Feb 27. Review.PMID: 17460793 [PubMed - indexed for MEDLINE]Related articles

Using noise to probe and characterize gene circuits.

Cox CD, McCollum JM, Allen MS, Dar RD, Simpson ML.

Proc Natl Acad Sci U S A. 2008 Aug 5;105(31):10809-14. Epub 2008 Jul 31.PMID: 18669661 [PubMed - indexed for MEDLINE]Related articlesFree article

The modularity of biological regulatory networks.

Thieffry D, Romero D.

Biosystems. 1999 Apr;50(1):49-59.PMID: 10235650 [PubMed - indexed for MEDLINE]Related articles

Computational design of synthetic gene circuits with composable parts.

Marchisio MA, Stelling J.

Bioinformatics. 2008 Sep 1;24(17):1903-10. Epub 2008 Jun 25.PMID: 18579565 [PubMed - indexed for MEDLINE]Related articlesFree article

Robust filtering circuit design for stochastic gene networks under intrinsic and extrinsic molecular noises.

Chen BS, Wu WS.

Math Biosci. 2008 Feb;211(2):342-55. Epub 2007 Nov 22.PMID: 18191422 [PubMed - indexed for MEDLINE]Related articles

Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability.

Cao Y, Liang J.

BMC Syst Biol. 2008 Mar 29;2:30.PMID: 18373871 [PubMed - indexed for MEDLINE]Related articlesFree article