PubMed

Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array.

Das S, Bhat PR, Sudhakar C, Ehlers JD, Wanamaker S, Roberts PA, Cui X, Close TJ.

BMC Genomics. 2008 Feb 28;9:107.PMID: 18307807 [PubMed - indexed for MEDLINE]Related articlesFree article

Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array.

Kim SH, Bhat PR, Cui X, Walia H, Xu J, Wanamaker S, Ismail AM, Wilson C, Close TJ.

BMC Plant Biol. 2009 May 29;9:65.PMID: 19480680 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays.

Bernardo AN, Bradbury PJ, Ma H, Hu S, Bowden RL, Buckler ES, Bai G.

BMC Genomics. 2009 May 29;10:251.PMID: 19480702 [PubMed - indexed for MEDLINE]Related articlesFree article

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequencing and analysis of the gene-rich space of cowpea.

Timko MP, Rushton PJ, Laudeman TW, Bokowiec MT, Chipumuro E, Cheung F, Town CD, Chen X.

BMC Genomics. 2008 Feb 27;9:103.PMID: 18304330 [PubMed - indexed for MEDLINE]Related articlesFree article

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs.

Muchero W, Diop NN, Bhat PR, Fenton RD, Wanamaker S, Pottorff M, Hearne S, Cisse N, Fatokun C, Ehlers JD, Roberts PA, Close TJ.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18159-64. Epub 2009 Oct 13.PMID: 19826088 [PubMed - in process]Related articlesFree article

Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding.

Sim SC, Robbins MD, Chilcott C, Zhu T, Francis DM.

BMC Genomics. 2009 Oct 9;10:466.PMID: 19818135 [PubMed - indexed for MEDLINE]Related articlesFree article

Mapping QTL for drought stress-induced premature senescence and maturity in cowpea [Vigna unguiculata (L.) Walp.].

Muchero W, Ehlers JD, Close TJ, Roberts PA.

Theor Appl Genet. 2009 Mar;118(5):849-63. Epub 2009 Jan 8.PMID: 19130034 [PubMed - indexed for MEDLINE]Related articles

Detecting single-feature polymorphisms using oligonucleotide arrays and robustified projection pursuit.

Cui X, Xu J, Asghar R, Condamine P, Svensson JT, Wanamaker S, Stein N, Roose M, Close TJ.

Bioinformatics. 2005 Oct 15;21(20):3852-8. Epub 2005 Aug 23.PMID: 16118260 [PubMed - indexed for MEDLINE]Related articlesFree article

High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis.

West MA, van Leeuwen H, Kozik A, Kliebenstein DJ, Doerge RW, St Clair DA, Michelmore RW.

Genome Res. 2006 Jun;16(6):787-95. Epub 2006 May 15.PMID: 16702412 [PubMed - indexed for MEDLINE]Related articlesFree article

A general pipeline for the development of anchor markers for comparative genomics in plants.

Fredslund J, Madsen LH, Hougaard BK, Nielsen AM, Bertioli D, Sandal N, Stougaard J, Schauser L.

BMC Genomics. 2006 Aug 14;7:207.PMID: 16907970 [PubMed - indexed for MEDLINE]Related articlesFree article

LegumeDB1 bioinformatics resource: comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species.

Moolhuijzen P, Cakir M, Hunter A, Schibeci D, Macgregor A, Smith C, Francki M, Jones MG, Appels R, Bellgard M.

Genome. 2006 Jun;49(6):689-99. Erratum in: Genome. 2006 Sep;49(9):1206-7. PMID: 16936848 [PubMed - indexed for MEDLINE]Related articles

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays.

Bischoff SR, Tsai S, Hardison NE, York AM, Freking BA, Nonneman D, Rohrer G, Piedrahita JA.

BMC Genomics. 2008 May 29;9:252.PMID: 18510738 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular genetics of race-specific resistance of cowpea to Striga gesnerioides (Willd.).

Li J, Lis KE, Timko MP.

Pest Manag Sci. 2009 May;65(5):520-7. Review.PMID: 19222045 [PubMed - indexed for MEDLINE]Related articles

Efficiency of three PCR-based markers in assessing genetic variation among cowpea (Vigna unguiculata subsp. unguiculata) landraces.

Tosti N, Negri V.

Genome. 2002 Apr;45(2):268-75.PMID: 11962624 [PubMed - indexed for MEDLINE]Related articles

Array-based high-throughput DNA markers for crop improvement.

Gupta PK, Rustgi S, Mir RR.

Heredity. 2008 Jul;101(1):5-18. Epub 2008 May 7. Review.PMID: 18461083 [PubMed - indexed for MEDLINE]Related articlesFree article

A microarray-based genotyping and genetic mapping approach for highly heterozygous outcrossing species enables localization of a large fraction of the unassembled Populus trichocarpa genome sequence.

Drost DR, Novaes E, Boaventura-Novaes C, Benedict CI, Brown RS, Yin T, Tuskan GA, Kirst M.

Plant J. 2009 Jun;58(6):1054-67. Epub 2009 Feb 10.PMID: 19220791 [PubMed - indexed for MEDLINE]Related articles

DArT markers: diversity analyses and mapping in Sorghum bicolor.

Mace ES, Xia L, Jordan DR, Halloran K, Parh DK, Huttner E, Wenzl P, Kilian A.

BMC Genomics. 2008 Jan 22;9:26.PMID: 18208620 [PubMed - indexed for MEDLINE]Related articlesFree article

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean.

Hyten DL, Song Q, Choi IY, Yoon MS, Specht JE, Matukumalli LK, Nelson RL, Shoemaker RC, Young ND, Cregan PB.

Theor Appl Genet. 2008 May;116(7):945-52. Epub 2008 Feb 16.PMID: 18278477 [PubMed - indexed for MEDLINE]Related articles

Single-feature polymorphism discovery in the barley transcriptome.

Rostoks N, Borevitz JO, Hedley PE, Russell J, Mudie S, Morris J, Cardle L, Marshall DF, Waugh R.

Genome Biol. 2005;6(6):R54. Epub 2005 May 11.PMID: 15960806 [PubMed - indexed for MEDLINE]Related articlesFree article