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Sampling and sensitivity analyses tools (SaSAT) for computational modelling.

Hoare A, Regan DG, Wilson DP.

Theor Biol Med Model. 2008 Feb 27;5:4.PMID: 18304361 [PubMed - indexed for MEDLINE]Related articlesFree article

PYCHEM: a multivariate analysis package for python.

Jarvis RM, Broadhurst D, Johnson H, O'Boyle NM, Goodacre R.

Bioinformatics. 2006 Oct 15;22(20):2565-6. Epub 2006 Jul 31.PMID: 16882648 [PubMed - indexed for MEDLINE]Related articlesFree article

BioBayes: a software package for Bayesian inference in systems biology.

Vyshemirsky V, Girolami M.

Bioinformatics. 2008 Sep 1;24(17):1933-4. Epub 2008 Jul 16.PMID: 18632751 [PubMed - indexed for MEDLINE]Related articlesFree article

MetMAP: an integrated Matlab package for analysis and optimization of metabolic systems.

Vera J, Torres NV.

In Silico Biol. 2004;4(2):97-108.PMID: 15089757 [PubMed - indexed for MEDLINE]Related articlesFree article

A methodology for performing global uncertainty and sensitivity analysis in systems biology.

Marino S, Hogue IB, Ray CJ, Kirschner DE.

J Theor Biol. 2008 Sep 7;254(1):178-96. Epub 2008 Apr 20. Review.PMID: 18572196 [PubMed - indexed for MEDLINE]Related articlesFree article

MatTAP: A MATLAB toolbox for the control and analysis of movement synchronisation experiments.

Elliott MT, Welchman AE, Wing AM.

J Neurosci Methods. 2009 Feb 15;177(1):250-7. Epub 2008 Oct 14.PMID: 18977388 [PubMed - indexed for MEDLINE]Related articles

InterferenceAnalyzer: tools for the analysis and simulation of multi-locus genetic data.

Viswanath L, Housworth EA.

BMC Bioinformatics. 2005 Dec 12;6:297.PMID: 16343334 [PubMed - indexed for MEDLINE]Related articlesFree article

Designing and encoding models for synthetic biology.

Endler L, Rodriguez N, Juty N, Chelliah V, Laibe C, Li C, Le Novère N.

J R Soc Interface. 2009 Aug 6;6 Suppl 4:S405-17. Epub 2009 Apr 1. Review.PMID: 19364720 [PubMed - indexed for MEDLINE]Related articles

mGrid: a load-balanced distributed computing environment for the remote execution of the user-defined Matlab code.

Karpievitch YV, Almeida JS.

BMC Bioinformatics. 2006 Mar 15;7:139.PMID: 16539707 [PubMed - indexed for MEDLINE]Related articlesFree article

SCEW: a Microsoft Excel add-in for easy creation of survival curves.

Khan HA.

Comput Methods Programs Biomed. 2006 Jul;83(1):12-7. Epub 2006 Jun 14.PMID: 16777258 [PubMed - indexed for MEDLINE]Related articles

The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.

Machné R, Finney A, Müller S, Lu J, Widder S, Flamm C.

Bioinformatics. 2006 Jun 1;22(11):1406-7. Epub 2006 Mar 9.PMID: 16527832 [PubMed - indexed for MEDLINE]Related articlesFree article

Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling.

Freyhult E, Prusis P, Lapinsh M, Wikberg JE, Moulton V, Gustafsson MG.

BMC Bioinformatics. 2005 Mar 10;6:50.PMID: 15760465 [PubMed - indexed for MEDLINE]Related articlesFree article

Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology.

Schmidt H, Jirstrand M.

Bioinformatics. 2006 Feb 15;22(4):514-5. Epub 2005 Nov 29.PMID: 16317076 [PubMed - indexed for MEDLINE]Related articlesFree article

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method.

Peters B, Sette A.

BMC Bioinformatics. 2005 May 31;6:132.PMID: 15927070 [PubMed - indexed for MEDLINE]Related articlesFree article

CellTrack: an open-source software for cell tracking and motility analysis.

Sacan A, Ferhatosmanoglu H, Coskun H.

Bioinformatics. 2008 Jul 15;24(14):1647-9. Epub 2008 May 29.PMID: 18511469 [PubMed - indexed for MEDLINE]Related articlesFree article

ScrumPy: metabolic modelling with Python.

Poolman MG.

Syst Biol (Stevenage). 2006 Sep;153(5):375-8.PMID: 16986321 [PubMed - indexed for MEDLINE]Related articles

SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool.

Zi Z, Zheng Y, Rundell AE, Klipp E.

BMC Bioinformatics. 2008 Aug 15;9:342.PMID: 18706080 [PubMed - indexed for MEDLINE]Related articlesFree article

GALGO: an R package for multivariate variable selection using genetic algorithms.

Trevino V, Falciani F.

Bioinformatics. 2006 May 1;22(9):1154-6. Epub 2006 Mar 1.PMID: 16510496 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox.

Becker SA, Feist AM, Mo ML, Hannum G, Palsson BØ, Herrgard MJ.

Nat Protoc. 2007;2(3):727-38.PMID: 17406635 [PubMed - indexed for MEDLINE]Related articles

An implementation framework for wastewater treatment models requiring a minimum programming expertise.

Rodríguez J, Premier GC, Dinsdale R, Guwy AJ.

Water Sci Technol. 2009;59(2):367-80.PMID: 19182350 [PubMed - indexed for MEDLINE]Related articles