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A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy.

Kong X, Mas V, Archer KJ.

BMC Genomics. 2008 Feb 26;9:98.PMID: 18302764 [PubMed - indexed for MEDLINE]Related articlesFree article

A unified framework for finding differentially expressed genes from microarray experiments.

Shaik JS, Yeasin M.

BMC Bioinformatics. 2007 Sep 18;8:347.PMID: 17877806 [PubMed - indexed for MEDLINE]Related articlesFree article

Combining Affymetrix microarray results.

Stevens JR, Doerge RW.

BMC Bioinformatics. 2005 Mar 17;6:57.PMID: 15774008 [PubMed - indexed for MEDLINE]Related articlesFree article

MAID : an effect size based model for microarray data integration across laboratories and platforms.

Borozan I, Chen L, Paeper B, Heathcote JE, Edwards AM, Katze M, Zhang Z, McGilvray ID.

BMC Bioinformatics. 2008 Jul 10;9:305.PMID: 18616827 [PubMed - indexed for MEDLINE]Related articlesFree article

Bayesian meta-analysis models for microarray data: a comparative study.

Conlon EM, Song JJ, Liu A.

BMC Bioinformatics. 2007 Mar 7;8:80.PMID: 17343745 [PubMed - indexed for MEDLINE]Related articlesFree article

Detecting differentially expressed genes by relative entropy.

Yan X, Deng M, Fung WK, Qian M.

J Theor Biol. 2005 Jun 7;234(3):395-402. Epub 2005 Jan 24.PMID: 15784273 [PubMed - indexed for MEDLINE]Related articles

A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments.

Hong F, Breitling R.

Bioinformatics. 2008 Feb 1;24(3):374-82. Epub 2008 Jan 18.PMID: 18204063 [PubMed - indexed for MEDLINE]Related articlesFree article

Differential and trajectory methods for time course gene expression data.

Liang Y, Tayo B, Cai X, Kelemen A.

Bioinformatics. 2005 Jul 1;21(13):3009-16. Epub 2005 May 10.PMID: 15886280 [PubMed - indexed for MEDLINE]Related articlesFree article

A resampling-based meta-analysis for detection of differential gene expression in breast cancer.

Gur-Dedeoglu B, Konu O, Kir S, Ozturk AR, Bozkurt B, Ergul G, Yulug IG.

BMC Cancer. 2008 Dec 30;8:396.PMID: 19116033 [PubMed - indexed for MEDLINE]Related articlesFree article

Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data.

Shen R, Ghosh D, Chinnaiyan AM.

BMC Genomics. 2004 Dec 14;5(1):94.PMID: 15598354 [PubMed - indexed for MEDLINE]Related articlesFree article

Rank-based methods as a non-parametric alternative of the T-statistic for the analysis of biological microarray data.

Breitling R, Herzyk P.

J Bioinform Comput Biol. 2005 Oct;3(5):1171-89.PMID: 16278953 [PubMed - indexed for MEDLINE]Related articles

Very Important Pool (VIP) genes--an application for microarray-based molecular signatures.

Su Z, Hong H, Fang H, Shi L, Perkins R, Tong W.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S9.PMID: 18793473 [PubMed - indexed for MEDLINE]Related articlesFree article

Integrative analysis of gene expression data including an assessment of pathway enrichment for predicting prostate cancer.

Hu P, Greenwood CM, Beyene J.

Cancer Inform. 2007 Feb 21;2:289-300.PMID: 19458772 [PubMed - in process]Related articlesFree article

Cross-species comparison of gene expression between human and porcine tissue, using single microarray platform--preliminary results.

Shah G, Azizian M, Bruch D, Mehta R, Kittur D.

Clin Transplant. 2004;18 Suppl 12:76-80.PMID: 15217413 [PubMed - indexed for MEDLINE]Related articles

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

Sartor MA, Tomlinson CR, Wesselkamper SC, Sivaganesan S, Leikauf GD, Medvedovic M.

BMC Bioinformatics. 2006 Dec 19;7:538.PMID: 17177995 [PubMed - indexed for MEDLINE]Related articlesFree article

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Culhane AC, Perrière G, Higgins DG.

BMC Bioinformatics. 2003 Nov 21;4:59.PMID: 14633289 [PubMed - indexed for MEDLINE]Related articlesFree article

An integrated approach for the analysis of biological pathways using mixed models.

Wang L, Zhang B, Wolfinger RD, Chen X.

PLoS Genet. 2008 Jul;4(7):e1000115. Epub 2008 Jul 4.PMID: 18852846 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data.

Jeffery IB, Higgins DG, Culhane AC.

BMC Bioinformatics. 2006 Jul 26;7:359.PMID: 16872483 [PubMed - indexed for MEDLINE]Related articlesFree article

A spline function approach for detecting differentially expressed genes in microarray data analysis.

He W.

Bioinformatics. 2004 Nov 22;20(17):2954-63. Epub 2004 Jun 4.PMID: 15180936 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene set enrichment analysis for non-monotone association and multiple experimental categories.

Lin R, Dai S, Irwin RD, Heinloth AN, Boorman GA, Li L.

BMC Bioinformatics. 2008 Nov 14;9:481.PMID: 19014579 [PubMed - indexed for MEDLINE]Related articlesFree article