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    Results: 1 to 20 of 677

    1.

    Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.

    Goelzer A, Bekkal Brikci F, Martin-Verstraete I, Noirot P, Bessières P, Aymerich S, Fromion V.

    BMC Syst Biol. 2008 Feb 26;2:20.PMID: 18302748 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli.

    Vázquez CD, Freyre-González JA, Gosset G, Loza JA, Gutiérrez-Ríos RM.

    BMC Microbiol. 2009 Aug 24;9:176.PMID: 19703276 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli.

    Gutierrez-Ríos RM, Freyre-Gonzalez JA, Resendis O, Collado-Vides J, Saier M, Gosset G.

    BMC Microbiol. 2007 Jun 8;7:53.PMID: 17559662 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Coordinations between gene modules control the operation of plant amino acid metabolic networks.

    Less H, Galili G.

    BMC Syst Biol. 2009 Jan 26;3:14.PMID: 19171064 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach.

    Ma HW, Buer J, Zeng AP.

    BMC Bioinformatics. 2004 Dec 16;5:199.PMID: 15603590 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    The role of DNA-binding specificity in the evolution of bacterial regulatory networks.

    Lozada-Chávez I, Angarica VE, Collado-Vides J, Contreras-Moreira B.

    J Mol Biol. 2008 Jun 6;379(3):627-43. Epub 2008 Apr 9.PMID: 18466918 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    MOVE: a multi-level ontology-based visualization and exploration framework for genomic networks.

    Bosman DW, Blom EJ, Ogao PJ, Kuipers OP, Roerdink JB.

    In Silico Biol. 2007;7(1):35-59.PMID: 17688427 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Accelerating the reconstruction of genome-scale metabolic networks.

    Notebaart RA, van Enckevort FH, Francke C, Siezen RJ, Teusink B.

    BMC Bioinformatics. 2006 Jun 13;7:296.PMID: 16772023 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Phenotype prediction in regulated metabolic networks.

    Kaleta C, Centler F, di Fenizio PS, Dittrich P.

    BMC Syst Biol. 2008 Apr 25;2:37.PMID: 18439260 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Network-based regulatory pathways analysis.

    Xiong M, Zhao J, Xiong H.

    Bioinformatics. 2004 Sep 1;20(13):2056-66. Epub 2004 Apr 8.PMID: 15072999 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Identification and analysis of DNA-binding transcription factors in Bacillus subtilis and other Firmicutes--a genomic approach.

    Moreno-Campuzano S, Janga SC, Pérez-Rueda E.

    BMC Genomics. 2006 Jun 13;7:147.PMID: 16772031 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Identification of functional modules using network topology and high-throughput data.

    Ulitsky I, Shamir R.

    BMC Syst Biol. 2007 Jan 26;1:8.PMID: 17408515 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134.

    Pérez-Pantoja D, De la Iglesia R, Pieper DH, González B.

    FEMS Microbiol Rev. 2008 Aug;32(5):736-94. Epub 2008 Aug 7. Review.PMID: 18691224 [PubMed - indexed for MEDLINE]Related articles

    14.

    Identifying dynamical modules from genetic regulatory systems: applications to the segment polarity network.

    Irons DJ, Monk NA.

    BMC Bioinformatics. 2007 Oct 25;8:413.PMID: 17961242 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Reconstruction of microbial transcriptional regulatory networks.

    Herrgård MJ, Covert MW, Palsson BØ.

    Curr Opin Biotechnol. 2004 Feb;15(1):70-7. Review.PMID: 15102470 [PubMed - indexed for MEDLINE]Related articles

    16.

    Biological Network Inference and analysis using SEBINI and CABIN.

    Taylor R, Singhal M.

    Methods Mol Biol. 2009;541:551-76. Review.PMID: 19381531 [PubMed - indexed for MEDLINE]Related articles

    17.

    The entire organization of transcription units on the Bacillus subtilis genome.

    Kobayashi H, Akitomi J, Fujii N, Kobayashi K, Altaf-Ul-Amin M, Kurokawa K, Ogasawara N, Kanaya S.

    BMC Genomics. 2007 Jun 28;8:197.PMID: 17598888 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Ranking of network elements based on functional substructures.

    Koschützki D, Schwöbbermeyer H, Schreiber F.

    J Theor Biol. 2007 Oct 7;248(3):471-9. Epub 2007 Jun 6.PMID: 17644116 [PubMed - indexed for MEDLINE]Related articles

    19.

    Simple molecular networks that respond optimally to time-periodic stimulation.

    Cournac A, Sepulchre JA.

    BMC Syst Biol. 2009 Mar 3;3:29.PMID: 19257878 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.

    Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM.

    BMC Syst Biol. 2008 Apr 4;2:31.PMID: 18387196 [PubMed - indexed for MEDLINE]Related articlesFree article

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