PubMed

OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature.

Furlong LI, Dach H, Hofmann-Apitius M, Sanz F.

BMC Bioinformatics. 2008 Feb 5;9:84.PMID: 18251998 [PubMed - indexed for MEDLINE]Related articlesFree article

OSIRIS: a tool for retrieving literature about sequence variants.

Bonis J, Furlong LI, Sanz F.

Bioinformatics. 2006 Oct 15;22(20):2567-9. Epub 2006 Jul 31.PMID: 16882651 [PubMed - indexed for MEDLINE]Related articlesFree article

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3.PMID: 18426548 [PubMed - indexed for MEDLINE]Related articlesFree article

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.PMID: 14871877 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143.PMID: 18325104 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.

Chun HW, Tsuruoka Y, Kim JD, Shiba R, Nagata N, Hishiki T, Tsujii J.

BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S4.PMID: 17134477 [PubMed - indexed for MEDLINE]Related articlesFree article

Disambiguation of biomedical text using diverse sources of information.

Stevenson M, Guo Y, Gaizauskas R, Martinez D.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S7.PMID: 19025693 [PubMed - indexed for MEDLINE]Related articlesFree article

Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction.

Santos C, Eggle D, States DJ.

Bioinformatics. 2005 Apr 15;21(8):1653-8. Epub 2004 Nov 25.PMID: 15564295 [PubMed - indexed for MEDLINE]Related articlesFree article

Identifying gene-specific variations in biomedical text.

Klinger R, Friedrich CM, Mevissen HT, Fluck J, Hofmann-Apitius M, Furlong LI, Sanz F.

J Bioinform Comput Biol. 2007 Dec;5(6):1277-96.PMID: 18172929 [PubMed - indexed for MEDLINE]Related articles

Extracting Protein-Protein Interactions from MEDLINE using the Hidden Vector State model.

Zhou D, He Y, Kwoh CK.

Int J Bioinform Res Appl. 2008;4(1):64-80.PMID: 18283029 [PubMed - indexed for MEDLINE]Related articlesFree article

Extraction of semantic biomedical relations from text using conditional random fields.

Bundschus M, Dejori M, Stetter M, Tresp V, Kriegel HP.

BMC Bioinformatics. 2008 Apr 23;9:207.PMID: 18433469 [PubMed - indexed for MEDLINE]Related articlesFree article

Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles.

Yu H, Kim W, Hatzivassiloglou V, Wilbur WJ.

J Biomed Inform. 2007 Apr;40(2):150-9. Epub 2006 Jun 7.PMID: 16843731 [PubMed - indexed for MEDLINE]Related articles

Inter-species normalization of gene mentions with GNAT.

Hakenberg J, Plake C, Leaman R, Schroeder M, Gonzalez G.

Bioinformatics. 2008 Aug 15;24(16):i126-132.PMID: 18689813 [PubMed - indexed for MEDLINE]Related articlesFree article

Hairpins in bookstacks: information retrieval from biomedical text.

Shatkay H.

Brief Bioinform. 2005 Sep;6(3):222-38. Review.PMID: 16212771 [PubMed - indexed for MEDLINE]Related articlesFree article

Various criteria in the evaluation of biomedical named entity recognition.

Tsai RT, Wu SH, Chou WC, Lin YC, He D, Hsiang J, Sung TY, Hsu WL.

BMC Bioinformatics. 2006 Feb 24;7:92.PMID: 16504116 [PubMed - indexed for MEDLINE]Related articlesFree article

Ranking the whole MEDLINE database according to a large training set using text indexing.

Suomela BP, Andrade MA.

BMC Bioinformatics. 2005 Mar 24;6:75.PMID: 15790421 [PubMed - indexed for MEDLINE]Related articlesFree article

PageRank without hyperlinks: reranking with PubMed related article networks for biomedical text retrieval.

Lin J.

BMC Bioinformatics. 2008 Jun 6;9:270.PMID: 18538027 [PubMed - indexed for MEDLINE]Related articlesFree article

An entity tagger for recognizing acquired genomic variations in cancer literature.

McDonald RT, Winters RS, Mandel M, Jin Y, White PS, Pereira F.

Bioinformatics. 2004 Nov 22;20(17):3249-51. Epub 2004 Jun 4.PMID: 15180929 [PubMed - indexed for MEDLINE]Related articlesFree article

An automated procedure to identify biomedical articles that contain cancer-associated gene variants.

McDonald R, Scott Winters R, Ankuda CK, Murphy JA, Rogers AE, Pereira F, Greenblatt MS, White PS.

Hum Mutat. 2006 Sep;27(9):957-64.PMID: 16865690 [PubMed - indexed for MEDLINE]Related articles

BioInfer: a corpus for information extraction in the biomedical domain.

Pyysalo S, Ginter F, Heimonen J, Björne J, Boberg J, Järvinen J, Salakoski T.

BMC Bioinformatics. 2007 Feb 9;8:50.PMID: 17291334 [PubMed - indexed for MEDLINE]Related articlesFree article