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    Results: 1 to 20 of 179

    1.

    Correction of technical bias in clinical microarray data improves concordance with known biological information.

    Eklund AC, Szallasi Z.

    Genome Biol. 2008;9(2):R26. Epub 2008 Feb 4.

    PMID:
    18248669
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Multiclass classification of microarray data with repeated measurements: application to cancer.

    Yeung KY, Bumgarner RE.

    Genome Biol. 2003;4(12):R83. Epub 2003 Nov 24. Erratum in: Genome Biol. 2005;6(13):405-405.4.

    PMID:
    14659020
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Reproducible and reliable microarray results through quality control: good laboratory proficiency and appropriate data analysis practices are essential.

    Shi L, Perkins RG, Fang H, Tong W.

    Curr Opin Biotechnol. 2008 Feb;19(1):10-8. Epub 2007 Dec 26. Review.

    PMID:
    18155896
    [PubMed - indexed for MEDLINE]
    4.

    Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

    Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.

    BMC Bioinformatics. 2007 Oct 25;8:412.

    PMID:
    17961233
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Evaluation of gene expression measurements from commercial microarray platforms.

    Tan PK, Downey TJ, Spitznagel EL Jr, Xu P, Fu D, Dimitrov DS, Lempicki RA, Raaka BM, Cam MC.

    Nucleic Acids Res. 2003 Oct 1;31(19):5676-84.

    PMID:
    14500831
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Rank Difference Analysis of Microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data.

    Martin DE, Demougin P, Hall MN, Bellis M.

    BMC Bioinformatics. 2004 Oct 11;5:148.

    PMID:
    15476558
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Gene set internal coherence in the context of functional profiling.

    Montaner D, Minguez P, Al-Shahrour F, Dopazo J.

    BMC Genomics. 2009 Apr 27;10:197.

    PMID:
    19397819
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Lack of correct data format and comparability limits future integrative microarray research.

    Larsson O, Sandberg R.

    Nat Biotechnol. 2006 Nov;24(11):1322-3. No abstract available.

    PMID:
    17093466
    [PubMed - indexed for MEDLINE]
    10.

    Performance comparison of two microarray platforms to assess differential gene expression in human monocyte and macrophage cells.

    Maouche S, Poirier O, Godefroy T, Olaso R, Gut I, Collet JP, Montalescot G, Cambien F.

    BMC Genomics. 2008 Jun 25;9:302.

    PMID:
    18578872
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Dye bias correction in dual-labeled cDNA microarray gene expression measurements.

    Rosenzweig BA, Pine PS, Domon OE, Morris SM, Chen JJ, Sistare FD.

    Environ Health Perspect. 2004 Mar;112(4):480-7.

    PMID:
    15033598
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Standardizing global gene expression analysis between laboratories and across platforms.

    Bammler T, Beyer RP, Bhattacharya S, Boorman GA, Boyles A, Bradford BU, Bumgarner RE, Bushel PR, Chaturvedi K, Choi D, Cunningham ML, Deng S, Dressman HK, Fannin RD, Farin FM, Freedman JH, Fry RC, Harper A, Humble MC, Hurban P, Kavanagh TJ, Kaufmann WK, Kerr KF, Jing L, Lapidus JA, Lasarev MR, Li J, Li YJ, Lobenhofer EK, Lu X, Malek RL, Milton S, Nagalla SR, O'malley JP, Palmer VS, Pattee P, Paules RS, Perou CM, Phillips K, Qin LX, Qiu Y, Quigley SD, Rodland M, Rusyn I, Samson LD, Schwartz DA, Shi Y, Shin JL, Sieber SO, Slifer S, Speer MC, Spencer PS, Sproles DI, Swenberg JA, Suk WA, Sullivan RC, Tian R, Tennant RW, Todd SA, Tucker CJ, Van Houten B, Weis BK, Xuan S, Zarbl H; Members of the Toxicogenomics Research Consortium.

    Nat Methods. 2005 May;2(5):351-6. Epub 2005 Apr 21. Erratum in: Nat Methods. 2005 Jun;2(6):477.

    PMID:
    15846362
    [PubMed - indexed for MEDLINE]
    13.

    Use of diagnostic accuracy as a metric for evaluating laboratory proficiency with microarray assays using mixed-tissue RNA reference samples.

    Pine PS, Boedigheimer M, Rosenzweig BA, Turpaz Y, He YD, Delenstarr G, Ganter B, Jarnagin K, Jones WD, Reid LH, Thompson KL.

    Pharmacogenomics. 2008 Nov;9(11):1753-63.

    PMID:
    19018728
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Increased measurement accuracy for sequence-verified microarray probes.

    Mecham BH, Wetmore DZ, Szallasi Z, Sadovsky Y, Kohane I, Mariani TJ.

    Physiol Genomics. 2004 Aug 11;18(3):308-15.

    PMID:
    15161964
    [PubMed - indexed for MEDLINE]
    15.

    Standards in gene expression microarray experiments.

    Salit M.

    Methods Enzymol. 2006;411:63-78. Review.

    PMID:
    16939786
    [PubMed - indexed for MEDLINE]
    16.

    Tilescope: online analysis pipeline for high-density tiling microarray data.

    Zhang ZD, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M.

    Genome Biol. 2007;8(5):R81.

    PMID:
    17501994
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Normalization for triple-target microarray experiments.

    Martin-Magniette ML, Aubert J, Bar-Hen A, Elftieh S, Magniette F, Renou JP, Daudin JJ.

    BMC Bioinformatics. 2008 Apr 28;9:216.

    PMID:
    18442385
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles.

    Kitchen RR, Sabine VS, Sims AH, Macaskill EJ, Renshaw L, Thomas JS, van Hemert JI, Dixon JM, Bartlett JM.

    BMC Genomics. 2010 Feb 24;11:134.

    PMID:
    20181233
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Clinical implementation of the intrinsic subtypes of breast cancer.

    Perou CM, Parker JS, Prat A, Ellis MJ, Bernard PS.

    Lancet Oncol. 2010 Aug;11(8):718-9; author reply 720-1. No abstract available.

    PMID:
    20688274
    [PubMed - indexed for MEDLINE]
    20.

    The need for standards, not guidelines, in biological data reporting and sharing.

    Burgoon LD.

    Nat Biotechnol. 2006 Nov;24(11):1369-73.

    PMID:
    17093486
    [PubMed - indexed for MEDLINE]

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