PubMed

Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes.

Gao F, Zhang CT.

BMC Bioinformatics. 2008 Feb 1;9:79.PMID: 18237442 [PubMed - indexed for MEDLINE]Related articlesFree article

DoriC: a database of oriC regions in bacterial genomes.

Gao F, Zhang CT.

Bioinformatics. 2007 Jul 15;23(14):1866-7. Epub 2007 May 12.PMID: 17496319 [PubMed - indexed for MEDLINE]Related articlesFree article

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170.PMID: 18366802 [PubMed - indexed for MEDLINE]Related articlesFree article

Origins of replication in Sorangium cellulosum and Microcystis aeruginosa.

Gao F, Zhang CT.

DNA Res. 2008 Jun 30;15(3):169-71. Epub 2008 May 12.PMID: 18477575 [PubMed - indexed for MEDLINE]Related articlesFree article

GenomeBlast: a web tool for small genome comparison.

Lu G, Jiang L, Helikar RM, Rowley TW, Zhang L, Chen X, Moriyama EN.

BMC Bioinformatics. 2006 Dec 12;7 Suppl 4:S18.PMID: 17217510 [PubMed - indexed for MEDLINE]Related articlesFree article

Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements.

Doh ST, Zhang Y, Temple MH, Cai L.

BMC Bioinformatics. 2007 Mar 15;8:94.PMID: 17362514 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of replication origins in prokaryotic genomes.

Sernova NV, Gelfand MS.

Brief Bioinform. 2008 Sep;9(5):376-91. Epub 2008 Jul 26. Review.PMID: 18660512 [PubMed - indexed for MEDLINE]Related articles

AT excursion: a new approach to predict replication origins in viral genomes by locating AT-rich regions.

Chew DS, Leung MY, Choi KP.

BMC Bioinformatics. 2007 May 21;8:163.PMID: 17517140 [PubMed - indexed for MEDLINE]Related articlesFree article

G-InforBIO: integrated system for microbial genomics.

Tanaka N, Abe T, Miyazaki S, Sugawara H.

BMC Bioinformatics. 2006 Aug 4;7:368.PMID: 16887044 [PubMed - indexed for MEDLINE]Related articlesFree article

A System for Automated Bacterial (genome) Integrated Annotation--SABIA.

Almeida LG, Paixão R, Souza RC, Costa GC, Barrientos FJ, Santos MT, Almeida DF, Vasconcelos AT.

Bioinformatics. 2004 Nov 1;20(16):2832-3. Epub 2004 Apr 15.PMID: 15087310 [PubMed - indexed for MEDLINE]Related articlesFree article

MuGeN: simultaneous exploration of multiple genomes and computer analysis results.

Hoebeke M, Nicolas P, Bessières P.

Bioinformatics. 2003 May 1;19(7):859-64.PMID: 12724296 [PubMed - indexed for MEDLINE]Related articlesFree article

Chromhome: a rich internet application for accessing comparative chromosome homology maps.

Nagarajan S, Rens W, Stalker J, Cox T, Ferguson-Smith MA.

BMC Bioinformatics. 2008 Mar 26;9:168.PMID: 18366796 [PubMed - indexed for MEDLINE]Related articlesFree article

BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes.

Luo Y, Fu C, Zhang DY, Lin K.

BMC Bioinformatics. 2007 Jul 25;8:266.PMID: 17650344 [PubMed - indexed for MEDLINE]Related articlesFree article

REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.

Linke B, McHardy AC, Neuweger H, Krause L, Meyer F.

Appl Bioinformatics. 2006;5(3):193-8.PMID: 16922601 [PubMed - indexed for MEDLINE]Related articles

The Z curve database: a graphic representation of genome sequences.

Zhang CT, Zhang R, Ou HY.

Bioinformatics. 2003 Mar 22;19(5):593-9.PMID: 12651717 [PubMed - indexed for MEDLINE]Related articlesFree article

Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences.

van Passel MW, Luyf AC, van Kampen AH, Bart A, van der Ende A.

Bioinformatics. 2005 Jul 1;21(13):3053-5. Epub 2005 Apr 26.PMID: 15855249 [PubMed - indexed for MEDLINE]Related articlesFree article

SNPsFinder--a web-based application for genome-wide discovery of single nucleotide polymorphisms in microbial genomes.

Song J, Xu Y, White S, Miller KW, Wolinsky M.

Bioinformatics. 2005 May 1;21(9):2083-4. Epub 2005 Feb 3.PMID: 15691853 [PubMed - indexed for MEDLINE]Related articlesFree article

Using the Ensembl genome server to browse genomic sequence data.

Fernández-Suárez XM, Schuster MK.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.15.PMID: 18428779 [PubMed - indexed for MEDLINE]Related articles

COMPAM :visualization of combining pairwise alignments for multiple genomes.

Lee D, Choi JH, Dalkilic MM, Kim S.

Bioinformatics. 2006 Jan 15;22(2):242-4. Epub 2005 Nov 3.PMID: 16269416 [PubMed - indexed for MEDLINE]Related articlesFree article

Interactive gene-order comparison for multiple small genomes.

Kaluszka A, Gibas C.

Bioinformatics. 2004 Dec 12;20(18):3662-4. Epub 2004 Jul 15.PMID: 15256414 [PubMed - indexed for MEDLINE]Related articlesFree article