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    Results: 1 to 20 of 327

    1.

    CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions.

    Hwang W, Cho YR, Zhang A, Ramanathan M.

    BMC Bioinformatics. 2008 Jan 29;9:64.PMID: 18230159 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    A novel functional module detection algorithm for protein-protein interaction networks.

    Hwang W, Cho YR, Zhang A, Ramanathan M.

    Algorithms Mol Biol. 2006 Dec 5;1:24.PMID: 17147822 [PubMed]Related articlesFree article

    3.

    A structural approach for finding functional modules from large biological networks.

    Mete M, Tang F, Xu X, Yuruk N.

    BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S19.PMID: 18793464 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Clustering algorithms for detecting functional modules in protein interaction networks.

    Gao L, Sun PG, Song J.

    J Bioinform Comput Biol. 2009 Feb;7(1):217-42.PMID: 19226668 [PubMed - indexed for MEDLINE]Related articles

    5.

    Discovering functional interaction patterns in protein-protein interaction networks.

    Turanalp ME, Can T.

    BMC Bioinformatics. 2008 Jun 11;9:276.PMID: 18547430 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    An ensemble framework for clustering protein-protein interaction networks.

    Asur S, Ucar D, Parthasarathy S.

    Bioinformatics. 2007 Jul 1;23(13):i29-40.PMID: 17646309 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Modifying the DPClus algorithm for identifying protein complexes based on new topological structures.

    Li M, Chen JE, Wang JX, Hu B, Chen G.

    BMC Bioinformatics. 2008 Sep 25;9:398.PMID: 18816408 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    A matrix-based multilevel approach to identify functional protein modules.

    Oliveira S, Seok SC.

    Int J Bioinform Res Appl. 2008;4(1):11-27.PMID: 18283026 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

    Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

    BMC Bioinformatics. 2006 Apr 14;7:207.PMID: 16613608 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Fitting a geometric graph to a protein-protein interaction network.

    Higham DJ, Rasajski M, Przulj N.

    Bioinformatics. 2008 Apr 15;24(8):1093-9. Epub 2008 Mar 14.PMID: 18344248 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    An algorithm for finding functional modules and protein complexes in protein-protein interaction networks.

    Cui G, Chen Y, Huang DS, Han K.

    J Biomed Biotechnol. 2008;2008:860270.PMID: 18385821 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    Modularization of biochemical networks based on classification of Petri net t-invariants.

    Grafahrend-Belau E, Schreiber F, Heiner M, Sackmann A, Junker BH, Grunwald S, Speer A, Winder K, Koch I.

    BMC Bioinformatics. 2008 Feb 8;9:90.PMID: 18257938 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Semantic integration to identify overlapping functional modules in protein interaction networks.

    Cho YR, Hwang W, Ramanathan M, Zhang A.

    BMC Bioinformatics. 2007 Jul 24;8:265.PMID: 17650343 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Efficient detection of network motifs.

    Wernicke S.

    IEEE/ACM Trans Comput Biol Bioinform. 2006 Oct-Dec;3(4):347-59.PMID: 17085844 [PubMed - indexed for MEDLINE]Related articles

    15.

    EDISA: extracting biclusters from multiple time-series of gene expression profiles.

    Supper J, Strauch M, Wanke D, Harter K, Zell A.

    BMC Bioinformatics. 2007 Sep 12;8:334.PMID: 17850657 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Supervised inference of gene-regulatory networks.

    To CC, Vohradsky J.

    BMC Bioinformatics. 2008 Jan 4;9:2.PMID: 18177495 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Motif search in graphs: application to metabolic networks.

    Lacroix V, Fernandes CG, Sagot MF.

    IEEE/ACM Trans Comput Biol Bioinform. 2006 Oct-Dec;3(4):360-8.PMID: 17085845 [PubMed - indexed for MEDLINE]Related articles

    18.

    Protein complex prediction via cost-based clustering.

    King AD, Przulj N, Jurisica I.

    Bioinformatics. 2004 Nov 22;20(17):3013-20. Epub 2004 Jun 4.PMID: 15180928 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    Clustering by common friends finds locally significant proteins mediating modules.

    Andreopoulos B, An A, Wang X, Faloutsos M, Schroeder M.

    Bioinformatics. 2007 May 1;23(9):1124-31. Epub 2007 Feb 21.PMID: 17314122 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    Growing functional modules from a seed protein via integration of protein interaction and gene expression data.

    Maraziotis IA, Dimitrakopoulou K, Bezerianos A.

    BMC Bioinformatics. 2007 Oct 23;8:408.PMID: 17956603 [PubMed - indexed for MEDLINE]Related articlesFree article

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