PubMed

Learning from positive examples when the negative class is undetermined--microRNA gene identification.

Yousef M, Jung S, Showe LC, Showe MK.

Algorithms Mol Biol. 2008 Jan 28;3:2.PMID: 18226233 [PubMed]Related articlesFree article

TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples.

Bandyopadhyay S, Mitra R.

Bioinformatics. 2009 Oct 15;25(20):2625-31. Epub 2009 Aug 19.PMID: 19692556 [PubMed - indexed for MEDLINE]Related articles

MiRTif: a support vector machine-based microRNA target interaction filter.

Yang Y, Wang YP, Li KB.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S4.PMID: 19091027 [PubMed - indexed for MEDLINE]Related articlesFree article

Naïve Bayes for microRNA target predictions--machine learning for microRNA targets.

Yousef M, Jung S, Kossenkov AV, Showe LC, Showe MK.

Bioinformatics. 2007 Nov 15;23(22):2987-92. Epub 2007 Oct 8.PMID: 17925304 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of feature selection and classification for MALDI-MS data.

Liu Q, Sung AH, Qiao M, Chen Z, Yang JY, Yang MQ, Huang X, Deng Y.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S3.PMID: 19594880 [PubMed - indexed for MEDLINE]Related articlesFree article

Using a kernel density estimation based classifier to predict species-specific microRNA precursors.

Chang DT, Wang CC, Chen JW.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S2.PMID: 19091019 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovery of dominant and dormant genes from expression data using a novel generalization of SNR for multi-class problems.

Tsai YS, Lin CT, Tseng GC, Chung IF, Pal NR.

BMC Bioinformatics. 2008 Oct 9;9:425.PMID: 18842155 [PubMed - indexed for MEDLINE]Related articlesFree article

Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier.

Yousef M, Nebozhyn M, Shatkay H, Kanterakis S, Showe LC, Showe MK.

Bioinformatics. 2006 Jun 1;22(11):1325-34. Epub 2006 Mar 16.PMID: 16543277 [PubMed - indexed for MEDLINE]Related articlesFree article

microPred: effective classification of pre-miRNAs for human miRNA gene prediction.

Batuwita R, Palade V.

Bioinformatics. 2009 Apr 15;25(8):989-95. Epub 2009 Feb 20.PMID: 19233894 [PubMed - indexed for MEDLINE]Related articles

Genome-wide sequence-based prediction of peripheral proteins using a novel semi-supervised learning technique.

Bhardwaj N, Gerstein M, Lu H.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S6.PMID: 20122235 [PubMed - in process]Related articlesFree article

Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimates.

Anand A, Suganthan PN.

J Theor Biol. 2009 Aug 7;259(3):533-40. Epub 2009 May 3.PMID: 19406131 [PubMed - indexed for MEDLINE]Related articles

Identification of microRNA precursors with support vector machine and string kernel.

Xu JH, Li F, Sun QF.

Genomics Proteomics Bioinformatics. 2008 Jun;6(2):121-8.PMID: 18973868 [PubMed - indexed for MEDLINE]Related articles

Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm.

Hsieh CH, Chang DT, Hsueh CH, Wu CY, Oyang YJ.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S52.PMID: 20122227 [PubMed - in process]Related articlesFree article

A study of microRNAs in silico and in vivo: bioinformatics approaches to microRNA discovery and target identification.

Yousef M, Showe L, Showe M.

FEBS J. 2009 Apr;276(8):2150-6. Epub 2009 Feb 25. Review.PMID: 19250313 [PubMed - indexed for MEDLINE]Related articles

A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model.

Judson R, Elloumi F, Setzer RW, Li Z, Shah I.

BMC Bioinformatics. 2008 May 19;9:241.PMID: 18489778 [PubMed - indexed for MEDLINE]Related articlesFree article

[Computational approaches to microRNA discovery]

Hou YY, Ying XM, Li WJ.

Yi Chuan. 2008 Jun;30(6):687-96. Review. Chinese. PMID: 18550489 [PubMed - indexed for MEDLINE]Related articles

A comparative study of different machine learning methods on microarray gene expression data.

Pirooznia M, Yang JY, Yang MQ, Deng Y.

BMC Genomics. 2008;9 Suppl 1:S13.PMID: 18366602 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting protein structural class by SVM with class-wise optimized features and decision probabilities.

Anand A, Pugalenthi G, Suganthan PN.

J Theor Biol. 2008 Jul 21;253(2):375-80. Epub 2008 Mar 4.PMID: 18423492 [PubMed - indexed for MEDLINE]Related articles

Prediction of guide strand of microRNAs from its sequence and secondary structure.

Ahmed F, Ansari HR, Raghava GP.

BMC Bioinformatics. 2009 Apr 9;10:105.PMID: 19358699 [PubMed - indexed for MEDLINE]Related articlesFree article

MicroRNA prediction with a novel ranking algorithm based on random walks.

Xu Y, Zhou X, Zhang W.

Bioinformatics. 2008 Jul 1;24(13):i50-8.PMID: 18586744 [PubMed - indexed for MEDLINE]Related articlesFree article