PubMed

TOBFAC: the database of tobacco transcription factors.

Rushton PJ, Bokowiec MT, Laudeman TW, Brannock JF, Chen X, Timko MP.

BMC Bioinformatics. 2008 Jan 25;9:53.PMID: 18221524 [PubMed - indexed for MEDLINE]Related articlesFree article

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae.

Rushton PJ, Bokowiec MT, Han S, Zhang H, Brannock JF, Chen X, Laudeman TW, Timko MP.

Plant Physiol. 2008 May;147(1):280-95. Epub 2008 Mar 12.PMID: 18337489 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequencing and analysis of the gene-rich space of cowpea.

Timko MP, Rushton PJ, Laudeman TW, Bokowiec MT, Chipumuro E, Cheung F, Town CD, Chen X.

BMC Genomics. 2008 Feb 27;9:103.PMID: 18304330 [PubMed - indexed for MEDLINE]Related articlesFree article

PlnTFDB: an integrative plant transcription factor database.

Riaño-Pachón DM, Ruzicic S, Dreyer I, Mueller-Roeber B.

BMC Bioinformatics. 2007 Feb 7;8:42.PMID: 17286856 [PubMed - indexed for MEDLINE]Related articlesFree article

AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.

Davuluri RV, Sun H, Palaniswamy SK, Matthews N, Molina C, Kurtz M, Grotewold E.

BMC Bioinformatics. 2003 Jun 23;4:25. Epub 2003 Jun 23.PMID: 12820902 [PubMed - indexed for MEDLINE]Related articlesFree article

PlantTFDB: a comprehensive plant transcription factor database.

Guo AY, Chen X, Gao G, Zhang H, Zhu QH, Liu XC, Zhong YF, Gu X, He K, Luo J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D966-9. Epub 2007 Oct 12.PMID: 17933783 [PubMed - indexed for MEDLINE]Related articlesFree article

GRASSIUS: a platform for comparative regulatory genomics across the grasses.

Yilmaz A, Nishiyama MY Jr, Fuentes BG, Souza GM, Janies D, Gray J, Grotewold E.

Plant Physiol. 2009 Jan;149(1):171-80. Epub 2008 Nov 5.PMID: 18987217 [PubMed - indexed for MEDLINE]Related articlesFree article

cTFbase: a database for comparative genomics of transcription factors in cyanobacteria.

Wu J, Zhao F, Wang S, Deng G, Wang J, Bai J, Lu J, Qu J, Bao Q.

BMC Genomics. 2007 Apr 18;8:104.PMID: 17439663 [PubMed - indexed for MEDLINE]Related articlesFree article

DRTF: a database of rice transcription factors.

Gao G, Zhong Y, Guo A, Zhu Q, Tang W, Zheng W, Gu X, Wei L, Luo J.

Bioinformatics. 2006 May 15;22(10):1286-7. Epub 2006 Mar 21.PMID: 16551659 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation, annotation, analysis and database integration of 16,500 white spruce EST clusters.

Pavy N, Paule C, Parsons L, Crow JA, Morency MJ, Cooke J, Johnson JE, Noumen E, Guillet-Claude C, Butterfield Y, Barber S, Yang G, Liu J, Stott J, Kirkpatrick R, Siddiqui A, Holt R, Marra M, Seguin A, Retzel E, Bousquet J, MacKay J.

BMC Genomics. 2005 Oct 19;6:144.PMID: 16236172 [PubMed - indexed for MEDLINE]Related articlesFree article

ESTuber db: an online database for Tuber borchii EST sequences.

Lazzari B, Caprera A, Cosentino C, Stella A, Milanesi L, Viotti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S13.PMID: 17430557 [PubMed - indexed for MEDLINE]Related articlesFree article

DPTF: a database of poplar transcription factors.

Zhu QH, Guo AY, Gao G, Zhong YF, Xu M, Huang M, Luo J.

Bioinformatics. 2007 May 15;23(10):1307-8. Epub 2007 Mar 28.PMID: 17392330 [PubMed - indexed for MEDLINE]Related articlesFree article

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.

Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S9.PMID: 18387211 [PubMed - indexed for MEDLINE]Related articlesFree article

Genome-wide analysis of the rice and Arabidopsis non-specific lipid transfer protein (nsLtp) gene families and identification of wheat nsLtp genes by EST data mining.

Boutrot F, Chantret N, Gautier MF.

BMC Genomics. 2008 Feb 21;9:86.PMID: 18291034 [PubMed - indexed for MEDLINE]Related articlesFree article

A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database.

Dehal PS, Boore JL.

BMC Bioinformatics. 2006 Apr 11;7:201.PMID: 16608522 [PubMed - indexed for MEDLINE]Related articlesFree article

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203.PMID: 18426580 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcription factor families have much higher expansion rates in plants than in animals.

Shiu SH, Shih MC, Li WH.

Plant Physiol. 2005 Sep;139(1):18-26.PMID: 16166257 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcription factors in rice: a genome-wide comparative analysis between monocots and eudicots.

Xiong Y, Liu T, Tian C, Sun S, Li J, Chen M.

Plant Mol Biol. 2005 Sep;59(1):191-203.PMID: 16217612 [PubMed - indexed for MEDLINE]Related articles

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors.

Park J, Park J, Jang S, Kim S, Kong S, Choi J, Ahn K, Kim J, Lee S, Kim S, Park B, Jung K, Kim S, Kang S, Lee YH.

Bioinformatics. 2008 Apr 1;24(7):1024-5. Epub 2008 Feb 26.PMID: 18304934 [PubMed - indexed for MEDLINE]Related articlesFree article