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Reconstructing phylogenies from noisy quartets in polynomial time with a high success probability.
Wu G, Kao MY, Lin G, You JH.
Algorithms Mol Biol. 2008 Jan 24;3:1.PMID: 18218120 [PubMed]Related articlesFree article
Constructing phylogenies from quartets: elucidation of eutherian superordinal relationships.
Ben-Dor A, Chor B, Graur D, Ophir R, Pelleg D.
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Optimal algorithms for local vertex quartet cleaning.
Della Vedova G, Wareham HT.
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Fast computation of distance estimators.
Elias I, Lagergren J.
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A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences.
Lacey MR, Chang JT.
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Short quartet puzzling: a new quartet-based phylogeny reconstruction algorithm.
Snir S, Warnow T, Rao S.
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A sharp error probability estimate for the reconstruction of phylogenetic quartets by the four-point method.
Lacey MR, Calmes J.
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Fast recovery of evolutionary trees with thousands of nodes.
Csurös M.
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Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle.
Desper R, Gascuel O.
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Fast calculation of the quartet distance between trees of arbitrary degrees.
Christiansen C, Mailund T, Pedersen CN, Randers M, Stissing MS.
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Quartet-based phylogeny reconstruction with answer set programming.
Wu G, You JH, Lin G.
IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):139-52.PMID: 17277421 [PubMed - indexed for MEDLINE]Related articles
On the impossibility of reconstructing ancestral data and phylogenies.
Mossel E.
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Using max cut to enhance rooted trees consistency.
Snir S, Rao S.
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ML or NJ-MCL? A comparison between two robust phylogenetic methods.
Som A.
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Quartet-based phylogenetic inference: improvements and limits.
Ranwez V, Gascuel O.
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A new fast heuristic for computing the breakpoint phylogeny and experimental phylogenetic analyses of real and synthetic data.
Cosner ME, Jansen RK, Moret BM, Raubeson LA, Wang LS, Warnow T, Wyman S.
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Clearcut: a fast implementation of relaxed neighbor joining.
Sheneman L, Evans J, Foster JA.
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Simultaneous phylogeny reconstruction and multiple sequence alignment.
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QDist--quartet distance between evolutionary trees.
Mailund T, Pedersen CN.
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Neighbor joining algorithms for inferring phylogenies via LCA distances.
Gronau I, Moran S.
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