PubMed

Genome-wide analysis of antisense transcription with Affymetrix exon array.

Ge X, Rubinstein WS, Jung YC, Wu Q.

BMC Genomics. 2008 Jan 22;9:27.PMID: 18211689 [PubMed - indexed for MEDLINE]Related articlesFree article

Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array.

Coram TE, Settles ML, Chen X.

BMC Genomics. 2009 May 29;10:253.PMID: 19480707 [PubMed - indexed for MEDLINE]Related articlesFree article

Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D.

Perocchi F, Xu Z, Clauder-Münster S, Steinmetz LM.

Nucleic Acids Res. 2007;35(19):e128. Epub 2007 Sep 26.PMID: 17897965 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression profiling of antisense transcripts on DNA arrays.

Werner A, Schmutzler G, Carlile M, Miles CG, Peters H.

Physiol Genomics. 2007 Feb 12;28(3):294-300. Epub 2006 Nov 14.PMID: 17105753 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121. PMID: 18990248 [PubMed - indexed for MEDLINE]Related articlesFree article

Uncovering information on expression of natural antisense transcripts in Affymetrix MOE430 datasets.

Oeder S, Mages J, Flicek P, Lang R.

BMC Genomics. 2007 Jun 28;8:200.PMID: 17598913 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of unique and common low abundance tumour-specific transcripts by suppression subtractive hybridization and oligonucleotide probe array analysis.

Liu BH, Goh CH, Ooi LL, Hui KM.

Oncogene. 2008 Jul 3;27(29):4128-36. Epub 2008 Mar 10.PMID: 18332864 [PubMed - indexed for MEDLINE]Related articles

Comparative expression analysis uncovers novel features of endogenous antisense transcription.

Okada Y, Tashiro C, Numata K, Watanabe K, Nakaoka H, Yamamoto N, Okubo K, Ikeda R, Saito R, Kanai A, Abe K, Tomita M, Kiyosawa H.

Hum Mol Genet. 2008 Jun 1;17(11):1631-40. Epub 2008 Feb 18.PMID: 18283053 [PubMed - indexed for MEDLINE]Related articlesFree article

Antisense transcripts with rice full-length cDNAs.

Osato N, Yamada H, Satoh K, Ooka H, Yamamoto M, Suzuki K, Kawai J, Carninci P, Ohtomo Y, Murakami K, Matsubara K, Kikuchi S, Hayashizaki Y.

Genome Biol. 2003;5(1):R5. Epub 2003 Dec 11.PMID: 14709177 [PubMed - indexed for MEDLINE]Related articlesFree article

Non-coding antisense transcription detected by conventional and single-stranded cDNA microarray.

Vallon-Christersson J, Staaf J, Kvist A, Medstrand P, Borg A, Rovira C.

BMC Genomics. 2007 Aug 29;8:295.PMID: 17727707 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.

Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN Jr, Markley JL, Sussman MR.

Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4453-8. Epub 2005 Mar 8.PMID: 15755812 [PubMed - indexed for MEDLINE]Related articlesFree article

Disclosing hidden transcripts: mouse natural sense-antisense transcripts tend to be poly(A) negative and nuclear localized.

Kiyosawa H, Mise N, Iwase S, Hayashizaki Y, Abe K.

Genome Res. 2005 Apr;15(4):463-74. Epub 2005 Mar 21.PMID: 15781571 [PubMed - indexed for MEDLINE]Related articlesFree article

Revised genomic structure of the human ghrelin gene and identification of novel exons, alternative splice variants and natural antisense transcripts.

Seim I, Collet C, Herington AC, Chopin LK.

BMC Genomics. 2007 Aug 30;8:298.PMID: 17727735 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes.

Numata K, Osada Y, Okada Y, Saito R, Hiraiwa N, Nakaoka H, Yamamoto N, Watanabe K, Okubo K, Kohama C, Kanai A, Abe K, Kiyosawa H.

BMC Genomics. 2009 Aug 22;10:392.PMID: 19698135 [PubMed - indexed for MEDLINE]Related articlesFree article

The CLIP-CHIP oligonucleotide microarray: dedicated array for analysis of all protease, nonproteolytic homolog, and inhibitor gene transcripts in human and mouse.

Kappelhoff R, Overall C.

Curr Protoc Protein Sci. 2009 Apr;Chapter 21:Unit21.19.PMID: 19365791 [PubMed - indexed for MEDLINE]Related articles

Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling.

Nikaido I, Saito C, Mizuno Y, Meguro M, Bono H, Kadomura M, Kono T, Morris GA, Lyons PA, Oshimura M, Hayashizaki Y, Okazaki Y; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1402-9.PMID: 12819139 [PubMed - indexed for MEDLINE]Related articlesFree article

Antisense transcription in the mammalian transcriptome.

Katayama S, Tomaru Y, Kasukawa T, Waki K, Nakanishi M, Nakamura M, Nishida H, Yap CC, Suzuki M, Kawai J, Suzuki H, Carninci P, Hayashizaki Y, Wells C, Frith M, Ravasi T, Pang KC, Hallinan J, Mattick J, Hume DA, Lipovich L, Batalov S, Engström PG, Mizuno Y, Faghihi MA, Sandelin A, Chalk AM, Mottagui-Tabar S, Liang Z, Lenhard B, Wahlestedt C; RIKEN Genome Exploration Research Group; Genome Science Group (Genome Network Project Core Group); FANTOM Consortium.

Science. 2005 Sep 2;309(5740):1564-6.PMID: 16141073 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues.

Grigoriadis A, Oliver GR, Tanney A, Kendrick H, Smalley MJ, Jat P, Neville AM.

BMC Genomics. 2009 Jul 17;10:324.PMID: 19615061 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational analysis reveals 43% antisense transcription in 1182 transcripts in mouse muscle.

Györffy A, Tulassay Z, Surowiak P, Györffy B.

DNA Seq. 2006 Dec;17(6):422-30.PMID: 17381043 [PubMed - indexed for MEDLINE]Related articles

Combining microarrays and genetic analysis.

Alberts R, Fu J, Swertz MA, Lubbers LA, Albers CJ, Jansen RC.

Brief Bioinform. 2005 Jun;6(2):135-45.PMID: 15975223 [PubMed - indexed for MEDLINE]Related articlesFree article