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Corpus annotation for mining biomedical events from literature.

Kim JD, Ohta T, Tsujii J.

BMC Bioinformatics. 2008 Jan 8;9:10.PMID: 18182099 [PubMed - indexed for MEDLINE]Related articlesFree article

GENIA corpus--semantically annotated corpus for bio-textmining.

Kim JD, Ohta T, Tateisi Y, Tsujii J.

Bioinformatics. 2003;19 Suppl 1:i180-2.PMID: 12855455 [PubMed - indexed for MEDLINE]Related articlesFree article

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.PMID: 14871877 [PubMed - indexed for MEDLINE]Related articlesFree article

The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes.

Vincze V, Szarvas G, Farkas R, Móra G, Csirik J.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S9.PMID: 19025695 [PubMed - indexed for MEDLINE]Related articlesFree article

Distributed modules for text annotation and IE applied to the biomedical domain.

Kirsch H, Gaudan S, Rebholz-Schuhmann D.

Int J Med Inform. 2006 Jun;75(6):496-500. Epub 2005 Aug 8.PMID: 16085453 [PubMed - indexed for MEDLINE]Related articles

Literature mining and database annotation of protein phosphorylation using a rule-based system.

Hu ZZ, Narayanaswamy M, Ravikumar KE, Vijay-Shanker K, Wu CH.

Bioinformatics. 2005 Jun 1;21(11):2759-65. Epub 2005 Apr 6.PMID: 15814565 [PubMed - indexed for MEDLINE]Related articlesFree article

Text mining and ontologies in biomedicine: making sense of raw text.

Spasic I, Ananiadou S, McNaught J, Kumar A.

Brief Bioinform. 2005 Sep;6(3):239-51. Review.PMID: 16212772 [PubMed - indexed for MEDLINE]Related articlesFree article

BioInfer: a corpus for information extraction in the biomedical domain.

Pyysalo S, Ginter F, Heimonen J, Björne J, Boberg J, Järvinen J, Salakoski T.

BMC Bioinformatics. 2007 Feb 9;8:50.PMID: 17291334 [PubMed - indexed for MEDLINE]Related articlesFree article

MedScan, a natural language processing engine for MEDLINE abstracts.

Novichkova S, Egorov S, Daraselia N.

Bioinformatics. 2003 Sep 1;19(13):1699-706.PMID: 12967967 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein annotation by EBIMed.

Rebholz-Schuhmann D, Kirsch H, Arregui M, Gaudan S, Rynbeek M, Stoehr P.

Nat Biotechnol. 2006 Aug;24(8):902-3. No abstract available. PMID: 16900125 [PubMed - indexed for MEDLINE]Related articles

BioRAT: extracting biological information from full-length papers.

Corney DP, Buxton BF, Langdon WB, Jones DT.

Bioinformatics. 2004 Nov 22;20(17):3206-13. Epub 2004 Jul 1.PMID: 15231534 [PubMed - indexed for MEDLINE]Related articlesFree article

A multi-level text mining method to extract biological relationships.

Palakal M, Stephens M, Mukhopadhyay S, Raje R, Rhodes S.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:97-108.PMID: 15838127 [PubMed - indexed for MEDLINE]Related articles

A survey of current work in biomedical text mining.

Cohen AM, Hersh WR.

Brief Bioinform. 2005 Mar;6(1):57-71. Review.PMID: 15826357 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143.PMID: 18325104 [PubMed - indexed for MEDLINE]Related articlesFree article

Developing a corpus of clinical notes manually annotated for part-of-speech.

Pakhomov SV, Coden A, Chute CG.

Int J Med Inform. 2006 Jun;75(6):418-29. Epub 2005 Sep 19.PMID: 16169769 [PubMed - indexed for MEDLINE]Related articles

An environment for relation mining over richly annotated corpora: the case of GENIA.

Rinaldi F, Schneider G, Kaljurand K, Hess M, Romacker M.

BMC Bioinformatics. 2006 Nov 24;7 Suppl 3:S3.PMID: 17134476 [PubMed - indexed for MEDLINE]Related articlesFree article

MedPost: a part-of-speech tagger for bioMedical text.

Smith L, Rindflesch T, Wilbur WJ.

Bioinformatics. 2004 Sep 22;20(14):2320-1. Epub 2004 Apr 8.PMID: 15073016 [PubMed - indexed for MEDLINE]Related articlesFree article

Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.

Aubry M, Monnier A, Chicault C, de Tayrac M, Galibert MD, Burgun A, Mosser J.

BMC Bioinformatics. 2006 May 4;7:241.PMID: 16674810 [PubMed - indexed for MEDLINE]Related articlesFree article

Inductive creation of an annotation schema for manually indexing clinical conditions from emergency department reports.

Chapman WW, Dowling JN.

J Biomed Inform. 2006 Apr;39(2):196-208. Epub 2005 Aug 22.PMID: 16230050 [PubMed - indexed for MEDLINE]Related articlesFree article

Hairpins in bookstacks: information retrieval from biomedical text.

Shatkay H.

Brief Bioinform. 2005 Sep;6(3):222-38. Review.PMID: 16212771 [PubMed - indexed for MEDLINE]Related articlesFree article