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Persistence drives gene clustering in bacterial genomes.

Fang G, Rocha EP, Danchin A.

BMC Genomics. 2008 Jan 7;9:4.PMID: 18179692 [PubMed - indexed for MEDLINE]Related articlesFree article

Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes.

Couturier E, Rocha EP.

Mol Microbiol. 2006 Mar;59(5):1506-18.PMID: 16468991 [PubMed - indexed for MEDLINE]Related articles

Detection of evolutionarily stable fragments of cellular pathways by hierarchical clustering of phyletic patterns.

Glazko GV, Mushegian AR.

Genome Biol. 2004;5(5):R32. Epub 2004 Apr 27.PMID: 15128446 [PubMed - indexed for MEDLINE]Related articlesFree article

Recurring cluster and operon assembly for Phenylacetate degradation genes.

Martin FJ, McInerney JO.

BMC Evol Biol. 2009 Feb 10;9:36.PMID: 19208251 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene organization: selection, selfishness, and serendipity.

Lawrence JG.

Annu Rev Microbiol. 2003;57:419-40. Review.PMID: 14527286 [PubMed - indexed for MEDLINE]Related articles

Selection for gene clustering by tandem duplication.

Reams AB, Neidle EL.

Annu Rev Microbiol. 2004;58:119-42. Review.PMID: 15487932 [PubMed - indexed for MEDLINE]Related articles

Comparing bacterial genomes through conservation profiles.

Martin MJ, Herrero J, Mateos A, Dopazo J.

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Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes.

Coenye T, Vandamme P.

FEMS Microbiol Lett. 2005 Jan 1;242(1):117-26.PMID: 15621428 [PubMed - indexed for MEDLINE]Related articles

A hybrid gene team model and its application to genome analysis.

Kim S, Choi JH, Saple A, Yang J.

J Bioinform Comput Biol. 2006 Apr;4(2):171-96.PMID: 16819779 [PubMed - indexed for MEDLINE]Related articles

From genes to genomes: universal scale-invariant properties of microbial chromosome organisation.

Audit B, Ouzounis CA.

J Mol Biol. 2003 Sep 19;332(3):617-33.PMID: 12963371 [PubMed - indexed for MEDLINE]Related articles

Identifying conserved gene clusters in the presence of homology families.

He X, Goldwasser MH.

J Comput Biol. 2005 Jul-Aug;12(6):638-56.PMID: 16108708 [PubMed - indexed for MEDLINE]Related articles

Large-scale analysis of gene clustering in bacteria.

Yang Q, Sze SH.

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Evolution of a microbial nitrilase gene family: a comparative and environmental genomics study.

Podar M, Eads JR, Richardson TH.

BMC Evol Biol. 2005 Aug 6;5:42.PMID: 16083508 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.

Rogozin IB, Makarova KS, Wolf YI, Koonin EV.

Brief Bioinform. 2004 Jun;5(2):131-49.PMID: 15260894 [PubMed - indexed for MEDLINE]Related articlesFree article

Conserved clusters of functionally related genes in two bacterial genomes.

Tamames J, Casari G, Ouzounis C, Valencia A.

J Mol Evol. 1997 Jan;44(1):66-73.PMID: 9010137 [PubMed - indexed for MEDLINE]Related articles

Optimal gene partition into operons correlates with gene functional order.

Zaslaver A, Mayo A, Ronen M, Alon U.

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Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales.

Guerrero G, Peralta H, Aguilar A, Díaz R, Villalobos MA, Medrano-Soto A, Mora J.

BMC Evol Biol. 2005 Oct 17;5:55.PMID: 16229745 [PubMed - indexed for MEDLINE]Related articlesFree article

Selfish operons: horizontal transfer may drive the evolution of gene clusters.

Lawrence JG, Roth JR.

Genetics. 1996 Aug;143(4):1843-60.PMID: 8844169 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

Fujibuchi W, Ogata H, Matsuda H, Kanehisa M.

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Phylogenetic detection of conserved gene clusters in microbial genomes.

Zheng Y, Anton BP, Roberts RJ, Kasif S.

BMC Bioinformatics. 2005 Oct 3;6:243.PMID: 16202130 [PubMed - indexed for MEDLINE]Related articlesFree article