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Analysis and prediction of protective continuous B-cell epitopes on pathogen proteins.

Sollner J, Grohmann R, Rapberger R, Perco P, Lukas A, Mayer B.

Immunome Res. 2008 Jan 7;4:1.PMID: 18179690 [PubMed - in process]Related articlesFree article

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.

Lin HH, Zhang GL, Tongchusak S, Reinherz EL, Brusic V.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S22.PMID: 19091022 [PubMed - indexed for MEDLINE]Related articlesFree article

Antibody-protein interactions: benchmark datasets and prediction tools evaluation.

Ponomarenko JV, Bourne PE.

BMC Struct Biol. 2007 Oct 2;7:64.PMID: 17910770 [PubMed - indexed for MEDLINE]Related articlesFree article

Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis.

Huang YX, Bao YL, Guo SY, Wang Y, Zhou CG, Li YX.

BMC Bioinformatics. 2008 Dec 16;9:538.PMID: 19087303 [PubMed - indexed for MEDLINE]Related articlesFree article

THE FATE OF THE GIANT CELLS IN HEALING TUBERCULOUS TISSUE, AS OBSERVED IN A CASE OF HEALING TUBERCULOUS MENINGITIS.

Hektoen L.

J Exp Med. 1898 Jan 1;3(1):21-52.PMID: 19866866 [PubMed - as supplied by publisher]Related articlesFree article

Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes.

Zhang GL, Khan AM, Srinivasan KN, Heiny A, Lee K, Kwoh CK, August JT, Brusic V.

BMC Bioinformatics. 2008;9 Suppl 1:S19.PMID: 18315850 [PubMed - indexed for MEDLINE]Related articlesFree article

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.

Larsen MV, Lundegaard C, Lamberth K, Buus S, Lund O, Nielsen M.

BMC Bioinformatics. 2007 Oct 31;8:424.PMID: 17973982 [PubMed - indexed for MEDLINE]Related articlesFree article

ElliPro: a new structure-based tool for the prediction of antibody epitopes.

Ponomarenko J, Bui HH, Li W, Fusseder N, Bourne PE, Sette A, Peters B.

BMC Bioinformatics. 2008 Dec 2;9:514.PMID: 19055730 [PubMed - indexed for MEDLINE]Related articlesFree article

STUDIES ON THE TUBERCULIN REACTION AND ON SPECIFIC HYPERSENSITIVENESS IN BACTERIAL INFECTION.

Zinsser H.

J Exp Med. 1921 Oct 31;34(5):495-524.PMID: 19868574 [PubMed - as supplied by publisher]Related articlesFree article

Selection and combination of machine learning classifiers for prediction of linear B-cell epitopes on proteins.

Söllner J.

J Mol Recognit. 2006 May-Jun;19(3):209-14.PMID: 16602136 [PubMed - indexed for MEDLINE]Related articles

Toward the prediction of class I and II mouse major histocompatibility complex-peptide-binding affinity: in silico bioinformatic step-by-step guide using quantitative structure-activity relationships.

Hattotuwagama CK, Doytchinova IA, Flower DR.

Methods Mol Biol. 2007;409:227-45.PMID: 18450004 [PubMed - indexed for MEDLINE]Related articles

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1.PMID: 18831774 [PubMed - indexed for MEDLINE]Related articlesFree article

PEPOP: computational design of immunogenic peptides.

Moreau V, Fleury C, Piquer D, Nguyen C, Novali N, Villard S, Laune D, Granier C, Molina F.

BMC Bioinformatics. 2008 Jan 30;9:71.PMID: 18234071 [PubMed - indexed for MEDLINE]Related articlesFree article

A machine-learning approach for predicting B-cell epitopes.

Rubinstein ND, Mayrose I, Pupko T.

Mol Immunol. 2009 Feb;46(5):840-7. Epub 2008 Oct 22.PMID: 18947876 [PubMed - indexed for MEDLINE]Related articles

[Evolution of IGRA researches]

Ariga H, Harada N.

Kekkaku. 2008 Sep;83(9):641-52. Review. Japanese. PMID: 18979999 [PubMed - indexed for MEDLINE]Related articles

Predicting linear B-cell epitopes using string kernels.

El-Manzalawy Y, Dobbs D, Honavar V.

J Mol Recognit. 2008 Jul-Aug;21(4):243-55.PMID: 18496882 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of genomewide conserved epitope profiles of HIV-1: classifier choice and peptide representation.

Xiao Y, Segal MR.

Stat Appl Genet Mol Biol. 2005;4:Article25. Epub 2005 Sep 16.PMID: 16646843 [PubMed]Related articlesFree article

Computational identification of ubiquitylation sites from protein sequences.

Tung CW, Ho SY.

BMC Bioinformatics. 2008 Jul 15;9:310.PMID: 18625080 [PubMed - indexed for MEDLINE]Related articlesFree article

Bioinformatics and immunologic investigation on B and T cell epitopes of Cur l 3, a major allergen of Curvularia lunata.

Sharma V, Singh BP, Gaur SN, Pasha S, Arora N.

J Proteome Res. 2009 Jun;8(6):2650-5.PMID: 19290623 [PubMed - indexed for MEDLINE]Related articles

Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research.

Lin HH, Ray S, Tongchusak S, Reinherz EL, Brusic V.

BMC Immunol. 2008 Mar 16;9:8.PMID: 18366636 [PubMed - indexed for MEDLINE]Related articlesFree article