PubMed

Switch-like genes populate cell communication pathways and are enriched for extracellular proteins.

Ertel A, Tozeren A.

BMC Genomics. 2008 Jan 4;9:3.PMID: 18177501 [PubMed - indexed for MEDLINE]Related articlesFree article

Human and mouse switch-like genes share common transcriptional regulatory mechanisms for bimodality.

Ertel A, Tozeren A.

BMC Genomics. 2008 Dec 23;9:628.PMID: 19105848 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression profiles of switch-like genes accurately classify tissue and infectious disease phenotypes in model-based classification.

Gormley M, Tozeren A.

BMC Bioinformatics. 2008 Nov 17;9:486.PMID: 19014681 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis of the interaction of extracellular matrix and phenotype of bladder cancer cells.

Dozmorov MG, Kyker KD, Saban R, Knowlton N, Dozmorov I, Centola MB, Hurst RE.

BMC Cancer. 2006 Jan 13;6:12.PMID: 16412233 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene expression profile in diabetic KK/Ta mice.

Fan Q, Shike T, Shigihara T, Tanimoto M, Gohda T, Makita Y, Wang LN, Horikoshi S, Tomino Y.

Kidney Int. 2003 Dec;64(6):1978-85.PMID: 14633120 [PubMed - indexed for MEDLINE]Related articles

Pathway-specific differences between tumor cell lines and normal and tumor tissue cells.

Ertel A, Verghese A, Byers SW, Ochs M, Tozeren A.

Mol Cancer. 2006 Nov 2;5(1):55.PMID: 17081305 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequential extracellular matrix-focused and baited-global cluster analysis of serial transcriptomic profiles identifies candidate modulators of renal tubulointerstitial fibrosis in murine adriamycin-induced nephropathy.

Sadlier DM, Connolly SB, Kieran NE, Roxburgh S, Brazil DP, Kairaitis L, Wang Y, Harris DC, Doran P, Brady HR.

J Biol Chem. 2004 Jul 9;279(28):29670-80. Epub 2004 Mar 18.PMID: 15033991 [PubMed - indexed for MEDLINE]Related articlesFree article

DNA microarray analysis reveals metastasis-associated genes in rat prostate cancer cell lines.

Reyes I, Tiwari R, Geliebter J, Reyes N.

Biomedica. 2007 Jun;27(2):190-203. Epub 2007 Aug 21.PMID: 17713630 [PubMed - indexed for MEDLINE]Related articlesFree article

Loss of alpha6 integrins in keratinocytes leads to an increase in TGFbeta and AP1 signaling and in expression of differentiation genes.

Rodius S, Indra G, Thibault C, Pfister V, Georges-Labouesse E.

J Cell Physiol. 2007 Aug;212(2):439-49.PMID: 17474077 [PubMed - indexed for MEDLINE]Related articles

Microarray analysis of extracellular matrix genes expression in myocardium of mouse with Coxsackie virus B3 myocarditis.

Zhang ZC, Li SJ, Yang YZ, Chen RZ, Ge JB, Chen HZ.

Chin Med J (Engl). 2004 Aug;117(8):1228-31.PMID: 15361300 [PubMed - indexed for MEDLINE]Related articlesFree article

Integrative genomics based identification of potential human hepatocarcinogenesis-associated cell cycle regulators: RHAMM as an example.

Yang CW, Su JY, Tsou AP, Chau GY, Liu HL, Chen CH, Chien CY, Chou CK.

Biochem Biophys Res Commun. 2005 May 6;330(2):489-97.PMID: 15796909 [PubMed - indexed for MEDLINE]Related articles

Development of a human mitochondrial oligonucleotide microarray (h-MitoArray) and gene expression analysis of fibroblast cell lines from 13 patients with isolated F1Fo ATP synthase deficiency.

Cízková A, Stránecký V, Ivánek R, Hartmannová H, Nosková L, Piherová L, Tesarová M, Hansíková H, Honzík T, Zeman J, Divina P, Potocká A, Paul J, Sperl W, Mayr JA, Seneca S, Houstĕk J, Kmoch S.

BMC Genomics. 2008 Jan 25;9:38.PMID: 18221507 [PubMed - indexed for MEDLINE]Related articlesFree article

From microarray to biology: an integrated experimental, statistical and in silico analysis of how the extracellular matrix modulates the phenotype of cancer cells.

Dozmorov MG, Kyker KD, Hauser PJ, Saban R, Buethe DD, Dozmorov I, Centola MB, Culkin DJ, Hurst RE.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S4.PMID: 18793468 [PubMed - indexed for MEDLINE]Related articlesFree article

Expression profiling of aging in the human skin.

Lener T, Moll PR, Rinnerthaler M, Bauer J, Aberger F, Richter K.

Exp Gerontol. 2006 Apr;41(4):387-97. Epub 2006 Mar 10.PMID: 16530368 [PubMed - indexed for MEDLINE]Related articles

Whole genome expression profiling reveals a significant role for immune function in human abdominal aortic aneurysms.

Lenk GM, Tromp G, Weinsheimer S, Gatalica Z, Berguer R, Kuivaniemi H.

BMC Genomics. 2007 Jul 16;8:237.PMID: 17634102 [PubMed - indexed for MEDLINE]Related articlesFree article

Influence of microvascular endothelial cells on transcriptional regulation of proximal tubular epithelial cells.

Aydin S, Signorelli S, Lechleitner T, Joannidis M, Pleban C, Perco P, Pfaller W, Jennings P.

Am J Physiol Cell Physiol. 2008 Feb;294(2):C543-54. Epub 2007 Dec 5.PMID: 18057119 [PubMed - indexed for MEDLINE]Related articlesFree article

Peripheral arterial occlusive disease: global gene expression analyses suggest a major role for immune and inflammatory responses.

Fu S, Zhao H, Shi J, Abzhanov A, Crawford K, Ohno-Machado L, Zhou J, Du Y, Kuo WP, Zhang J, Jiang M, Jin JG.

BMC Genomics. 2008 Aug 1;9:369.PMID: 18673543 [PubMed - indexed for MEDLINE]Related articlesFree article

Secretome analysis of microarray data reveals extracellular events associated with proliferative potential in a cell line model of breast disease.

Dombkowski AA, Cukovic D, Novak RF.

Cancer Lett. 2006 Sep 8;241(1):49-58. Epub 2005 Nov 17.PMID: 16298039 [PubMed - indexed for MEDLINE]Related articles

Fluoride at non-toxic dose affects odontoblast gene expression in vitro.

Wurtz T, Houari S, Mauro N, MacDougall M, Peters H, Berdal A.

Toxicology. 2008 Jul 10;249(1):26-34. Epub 2008 Apr 25.PMID: 18511171 [PubMed - indexed for MEDLINE]Related articles

Mapping the genetic architecture of gene expression in human liver.

Schadt EE, Molony C, Chudin E, Hao K, Yang X, Lum PY, Kasarskis A, Zhang B, Wang S, Suver C, Zhu J, Millstein J, Sieberts S, Lamb J, GuhaThakurta D, Derry J, Storey JD, Avila-Campillo I, Kruger MJ, Johnson JM, Rohl CA, van Nas A, Mehrabian M, Drake TA, Lusis AJ, Smith RC, Guengerich FP, Strom SC, Schuetz E, Rushmore TH, Ulrich R.

PLoS Biol. 2008 May 6;6(5):e107.PMID: 18462017 [PubMed - indexed for MEDLINE]Related articlesFree article