PubMed

Evaluating deterministic motif significance measures in protein databases.

Ferreira PG, Azevedo PJ.

Algorithms Mol Biol. 2007 Dec 24;2:16.PMID: 18157916 [PubMed]Related articlesFree article

Outcome prediction based on microarray analysis: a critical perspective on methods.

Zervakis M, Blazadonakis ME, Tsiliki G, Danilatou V, Tsiknakis M, Kafetzopoulos D.

BMC Bioinformatics. 2009 Feb 7;10:53.PMID: 19200394 [PubMed - indexed for MEDLINE]Related articlesFree article

NestedMICA as an ab initio protein motif discovery tool.

Doğruel M, Down TA, Hubbard TJ.

BMC Bioinformatics. 2008 Jan 14;9:19.PMID: 18194537 [PubMed - indexed for MEDLINE]Related articlesFree article

Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles.

Tsai RT, Hung HC, Dai HJ, Lin YW, Hsu WL.

BMC Bioinformatics. 2008;9 Suppl 1:S3.PMID: 18315856 [PubMed - indexed for MEDLINE]Related articlesFree article

THE FATE OF THE GIANT CELLS IN HEALING TUBERCULOUS TISSUE, AS OBSERVED IN A CASE OF HEALING TUBERCULOUS MENINGITIS.

Hektoen L.

J Exp Med. 1898 Jan 1;3(1):21-52.PMID: 19866866 [PubMed - as supplied by publisher]Related articlesFree article

Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae.

Fauteux F, Strömvik MV.

BMC Plant Biol. 2009 Oct 20;9:126.PMID: 19843335 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison study on k-word statistical measures for protein: from sequence to 'sequence space'.

Dai Q, Wang T.

BMC Bioinformatics. 2008 Sep 23;9:394.PMID: 18811946 [PubMed - indexed for MEDLINE]Related articlesFree article

FISim: a new similarity measure between transcription factor binding sites based on the fuzzy integral.

Garcia F, Lopez FJ, Cano C, Blanco A.

BMC Bioinformatics. 2009 Jul 20;10:224.PMID: 19615102 [PubMed - indexed for MEDLINE]Related articlesFree article

MSDmotif: exploring protein sites and motifs.

Golovin A, Henrick K.

BMC Bioinformatics. 2008 Jul 17;9:312.PMID: 18637174 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel Bayesian DNA motif comparison method for clustering and retrieval.

Habib N, Kaplan T, Margalit H, Friedman N.

PLoS Comput Biol. 2008 Feb 29;4(2):e1000010.PMID: 18463706 [PubMed - indexed for MEDLINE]Related articlesFree article

Representative transcript sets for evaluating a translational initiation sites predictor.

Zeng J, Alhajj R, Demetrick DJ.

BMC Bioinformatics. 2009 Jul 2;10:206.PMID: 19573244 [PubMed - indexed for MEDLINE]Related articlesFree article

Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines.

Xu X, Ji Y, Stormo GD.

PLoS Comput Biol. 2009 Apr;5(4):e1000338. Epub 2009 Apr 3.PMID: 19343219 [PubMed - indexed for MEDLINE]Related articlesFree article

Clustering-based approach for predicting motif pairs from protein interaction data.

Leung HC, Siu MH, Yiu SM, Chin FY, Sung KW.

J Bioinform Comput Biol. 2009 Aug;7(4):701-16.PMID: 19634199 [PubMed - indexed for MEDLINE]Related articles

ARCS-Motif: discovering correlated motifs from unaligned biological sequences.

Zhang S, Su W, Yang J.

Bioinformatics. 2009 Jan 15;25(2):183-9. Epub 2008 Dec 9.PMID: 19073591 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge.

Krallinger M, Morgan A, Smith L, Leitner F, Tanabe L, Wilbur J, Hirschman L, Valencia A.

Genome Biol. 2008;9 Suppl 2:S1. Epub 2008 Sep 1.PMID: 18834487 [PubMed - indexed for MEDLINE]Related articlesFree article

Structural motifs recurring in different folds recognize the same ligand fragments.

Ausiello G, Gherardini PF, Gatti E, Incani O, Helmer-Citterich M.

BMC Bioinformatics. 2009 Jun 15;10:182.PMID: 19527512 [PubMed - indexed for MEDLINE]Related articlesFree article

Compo: composite motif discovery using discrete models.

Sandve GK, Abul O, Drabløs F.

BMC Bioinformatics. 2008 Dec 8;9:527.PMID: 19063744 [PubMed - indexed for MEDLINE]Related articlesFree article

Extraction of human kinase mutations from literature, databases and genotyping studies.

Krallinger M, Izarzugaza JM, Rodriguez-Penagos C, Valencia A.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S1.PMID: 19758464 [PubMed - indexed for MEDLINE]Related articlesFree article

An approach to evaluate the topological significance of motifs and other patterns in regulatory networks.

Goemann B, Wingender E, Potapov AP.

BMC Syst Biol. 2009 May 19;3:53.PMID: 19454001 [PubMed - indexed for MEDLINE]Related articlesFree article

The conservation pattern of short linear motifs is highly correlated with the function of interacting protein domains.

Ren S, Yang G, He Y, Wang Y, Li Y, Chen Z.

BMC Genomics. 2008 Oct 1;9:452.PMID: 18828911 [PubMed - indexed for MEDLINE]Related articlesFree article