Warning: The NCBI web site requires JavaScript to function. more...
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction.
Gross SS, Do CB, Sirota M, Batzoglou S.
Genome Biol. 2007;8(12):R269.
Related citations
Using ESTs to improve the accuracy of de novo gene prediction.
Wei C, Brent MR.
BMC Bioinformatics. 2006 Jul 3;7:327.
Gene prediction: compare and CONTRAST.
Flicek P.
Genome Biol. 2007;8(12):233. Review.
Vertebrate gene finding from multiple-species alignments using a two-level strategy.
Carter D, Durbin R.
Genome Biol. 2006;7 Suppl 1:S6.1-12. Epub 2006 Aug 7.
Global discriminative learning for higher-accuracy computational gene prediction.
Bernal A, Crammer K, Hatzigeorgiou A, Pereira F.
PLoS Comput Biol. 2007 Mar 16;3(3):e54. Epub 2007 Feb 2.
GeneAlign: a coding exon prediction tool based on phylogenetical comparisons.
Hsieh SJ, Lin CY, Liu NH, Chow WY, Tang CY.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W280-4.
Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.
Arumugam M, Wei C, Brown RH, Brent MR.
Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.
Gene structure prediction using an orthologous gene of known exon-intron structure.
Seneff S, Wang C, Burge CB.
Appl Bioinformatics. 2004;3(2-3):81-90.
Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts.
Flicek P, Brent MR.
Genome Biol. 2006;7 Suppl 1:S8.1-9. Epub 2006 Aug 7.
Inferring gene structures in genomic sequences using pattern recognition and expressed sequence tags.
Xu Y, Mural RJ, Uberbacher EC.
Proc Int Conf Intell Syst Mol Biol. 1997;5:344-53.
Using multiple alignments to improve seeded local alignment algorithms.
Flannick J, Batzoglou S.
Nucleic Acids Res. 2005 Aug 12;33(14):4563-77. Print 2005.
Using multiple alignments to improve gene prediction.
Gross SS, Brent MR.
J Comput Biol. 2006 Mar;13(2):379-93.
Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.
Djebali S, Delaplace F, Roest Crollius H.
Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.
CSA: an efficient algorithm to improve circular DNA multiple alignment.
Fernandes F, Pereira L, Freitas AT.
BMC Bioinformatics. 2009 Jul 23;10:230.
Dinucleotide controlled null models for comparative RNA gene prediction.
Gesell T, Washietl S.
BMC Bioinformatics. 2008 May 27;9:248.
RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.
Bindewald E, Shapiro BA.
RNA. 2006 Mar;12(3):342-52.
XRate: a fast prototyping, training and annotation tool for phylo-grammars.
Klosterman PS, Uzilov AV, Bendaña YR, Bradley RK, Chao S, Kosiol C, Goldman N, Holmes I.
BMC Bioinformatics. 2006 Oct 3;7:428.
SnoReport: computational identification of snoRNAs with unknown targets.
Hertel J, Hofacker IL, Stadler PF.
Bioinformatics. 2008 Jan 15;24(2):158-64. Epub 2007 Sep 25.
Improving the specificity of exon prediction using comparative genomics.
Wu J.
BMC Genomics. 2008 Sep 16;9 Suppl 2:S13.
Promoter-sharing by different genes in human genome--CPNE1 and RBM12 gene pair as an example.
Yang W, Ng P, Zhao M, Wong TK, Yiu SM, Lau YL.
BMC Genomics. 2008 Oct 3;9:456.
Filter your results:
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on