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An analysis of the epitope knowledge related to Mycobacteria.

Blythe MJ, Zhang Q, Vaughan K, de Castro R Jr, Salimi N, Bui HH, Lewinsohn DM, Ernst JD, Peters B, Sette A.

Immunome Res. 2007 Dec 14;3:10.PMID: 18081934 [PubMed - in process]Related articlesFree article

[Evolution of IGRA researches]

Ariga H, Harada N.

Kekkaku. 2008 Sep;83(9):641-52. Review. Japanese. PMID: 18979999 [PubMed - indexed for MEDLINE]Related articles

Pattern recognition in pulmonary tuberculosis defined by high content peptide microarray chip analysis representing 61 proteins from M. tuberculosis.

Gaseitsiwe S, Valentini D, Mahdavifar S, Magalhaes I, Hoft DF, Zerweck J, Schutkowski M, Andersson J, Reilly M, Maeurer MJ.

PLoS One. 2008;3(12):e3840. Epub 2008 Dec 9.PMID: 19065269 [PubMed - indexed for MEDLINE]Related articlesFree article

Classification of the universe of immune epitope literature: representation and knowledge gaps.

Davies V, Vaughan K, Damle R, Peters B, Sette A.

PLoS One. 2009 Sep 14;4(9):e6948.PMID: 19774228 [PubMed - indexed for MEDLINE]Related articlesFree article

Ab and T cell epitopes of influenza A virus, knowledge and opportunities.

Bui HH, Peters B, Assarsson E, Mbawuike I, Sette A.

Proc Natl Acad Sci U S A. 2007 Jan 2;104(1):246-51.PMID: 17200302 [PubMed - indexed for MEDLINE]Related articlesFree article

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines.

Bui HH, Sidney J, Li W, Fusseder N, Sette A.

BMC Bioinformatics. 2007 Sep 26;8:361.PMID: 17897458 [PubMed - indexed for MEDLINE]Related articlesFree article

An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities.

Sathiamurthy M, Peters B, Bui HH, Sidney J, Mokili J, Wilson SS, Fleri W, McGuinness DL, Bourne PE, Sette A.

Immunome Res. 2005 Sep 20;1(1):2.PMID: 16305755 [PubMed]Related articlesFree article

Meeting Report: NIH Workshop on the Tuberculosis Immune Epitope Database.

Ernst JD, Lewinsohn DM, Behar S, Blythe M, Schlesinger LS, Kornfeld H, Sette A.

Tuberculosis (Edinb). 2008 Jul;88(4):366-70. Epub 2007 Dec 18.PMID: 18068490 [PubMed - indexed for MEDLINE]Related articlesFree article

Meta-analysis of immune epitope data for all Plasmodia: overview and applications for malarial immunobiology and vaccine-related issues.

Vaughan K, Blythe M, Greenbaum J, Zhang Q, Peters B, Doolan DL, Sette A.

Parasite Immunol. 2009 Feb;31(2):78-97.PMID: 19149776 [PubMed - indexed for MEDLINE]Related articles

A novel DNA vaccine containing multiple TB-specific epitopes casted in a natural structure (ECANS) confers protective immunity against pulmonary mycobacterial challenge.

Gao H, Yue Y, Hu L, Xu W, Xiong S.

Vaccine. 2009 Aug 27;27(39):5313-9. Epub 2009 Jul 16.PMID: 19615961 [PubMed - indexed for MEDLINE]Related articles

Analysis of epitope information related to Bacillus anthracis and Clostridium botulinum.

Zarebski LM, Vaughan K, Sidney J, Peters B, Grey H, Janda KD, Casadevall A, Sette A.

Expert Rev Vaccines. 2008 Feb;7(1):55-74. Review.PMID: 18251694 [PubMed - indexed for MEDLINE]Related articles

Plan to combat extensively drug-resistant tuberculosis: recommendations of the Federal Tuberculosis Task Force.

Centers for Disease Control and Prevention (CDC).

MMWR Recomm Rep. 2009 Feb 13;58(RR-3):1-43.PMID: 19214162 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification of gene targets against dormant phase Mycobacterium tuberculosis infections.

Murphy DJ, Brown JR.

BMC Infect Dis. 2007 Jul 26;7:84.PMID: 17655757 [PubMed - indexed for MEDLINE]Related articlesFree article

A model of phenotypic susceptibility to tuberculosis: deficient in silico selection of Mycobacterium tuberculosis epitopes by HLA alleles.

Contini S, Pallante M, Vejbaesya S, Park MH, Chierakul N, Kim HS, Saltini C, Amicosante M.

Sarcoidosis Vasc Diffuse Lung Dis. 2008 Sep;25(1):21-8.PMID: 19070257 [PubMed - indexed for MEDLINE]Related articles

Extensive major histocompatibility complex class I binding promiscuity for Mycobacterium tuberculosis TB10.4 peptides and immune dominance of human leucocyte antigen (HLA)-B*0702 and HLA-B*0801 alleles in TB10.4 CD8(+) T-cell responses.

Axelsson-Robertson R, Weichold F, Sizemore D, Wulf M, Skeiky YA, Sadoff J, Maeurer MJ.

Immunology. . [Epub ahead of print]PMID: 20002212 [PubMed - as supplied by publisher]Related articles

[Mycobacterial tests]

Takashima T, Higuchi T.

Kekkaku. 2008 Jan;83(1):43-59. Japanese. PMID: 18283915 [PubMed - indexed for MEDLINE]Related articles

Memory T cells specific for novel human papillomavirus type 16 (HPV16) E6 epitopes in women whose HPV16 infection has become undetectable.

Wang X, Moscicki AB, Tsang L, Brockman A, Nakagawa M.

Clin Vaccine Immunol. 2008 Jun;15(6):937-45. Epub 2008 Apr 30.PMID: 18448624 [PubMed - indexed for MEDLINE]Related articlesFree article

targetTB: a target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis.

Raman K, Yeturu K, Chandra N.

BMC Syst Biol. 2008 Dec 19;2:109.PMID: 19099550 [PubMed - indexed for MEDLINE]Related articlesFree article

Textmining in support of knowledge discovery for vaccine development.

Schönbach C, Nagashima T, Konagaya A.

Methods. 2004 Dec;34(4):488-95. Review.PMID: 15542375 [PubMed - indexed for MEDLINE]Related articles

Whole genome identification of Mycobacterium tuberculosis vaccine candidates by comprehensive data mining and bioinformatic analyses.

Zvi A, Ariel N, Fulkerson J, Sadoff JC, Shafferman A.

BMC Med Genomics. 2008 May 28;1:18.PMID: 18505592 [PubMed]Related articlesFree article