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    Results: 1 to 20 of 180

    1.

    High-throughput sequence alignment using Graphics Processing Units.

    Schatz MC, Trapnell C, Delcher AL, Varshney A.

    BMC Bioinformatics. 2007 Dec 10;8:474.PMID: 18070356 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment.

    Manavski SA, Valle G.

    BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S10.PMID: 18387198 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies.

    Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P.

    BMC Genomics. 2008 Dec 16;9:603.PMID: 19087275 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units.

    Liu Y, Maskell DL, Schmidt B.

    BMC Res Notes. 2009 May 6;2:73.PMID: 19416548 [PubMed - in process]Related articlesFree article

    5.

    GATA: a graphic alignment tool for comparative sequence analysis.

    Nix DA, Eisen MB.

    BMC Bioinformatics. 2005 Jan 17;6:9.PMID: 15655071 [PubMed - indexed for MEDLINE]Related articlesFree article

    6.

    A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads.

    Rausch T, Koren S, Denisov G, Weese D, Emde AK, Döring A, Reinert K.

    Bioinformatics. 2009 May 1;25(9):1118-24. Epub 2009 Mar 5.PMID: 19269990 [PubMed - indexed for MEDLINE]Related articles

    7.

    EagleView: a genome assembly viewer for next-generation sequencing technologies.

    Huang W, Marth G.

    Genome Res. 2008 Sep;18(9):1538-43. Epub 2008 Jun 11.PMID: 18550804 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Pegasys: software for executing and integrating analyses of biological sequences.

    Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF.

    BMC Bioinformatics. 2004 Apr 19;5:40.PMID: 15096276 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    XplorSeq: a software environment for integrated management and phylogenetic analysis of metagenomic sequence data.

    Frank DN.

    BMC Bioinformatics. 2008 Oct 7;9:420.PMID: 18840282 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters.

    Wang C, Lefkowitz EJ.

    BMC Bioinformatics. 2004 Oct 28;5:171.PMID: 15511296 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Accelerating epistasis analysis in human genetics with consumer graphics hardware.

    Sinnott-Armstrong NA, Greene CS, Cancare F, Moore JH.

    BMC Res Notes. 2009 Jul 24;2:149.PMID: 19630950 [PubMed - in process]Related articlesFree article

    12.

    The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.

    Droege M, Hill B.

    J Biotechnol. 2008 Aug 31;136(1-2):3-10. Epub 2008 Jun 21. Review.PMID: 18616967 [PubMed - indexed for MEDLINE]Related articles

    13.

    Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.

    Cheung F, Haas BJ, Goldberg SM, May GD, Xiao Y, Town CD.

    BMC Genomics. 2006 Oct 24;7:272.PMID: 17062153 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    High performance computing for deformable image registration: towards a new paradigm in adaptive radiotherapy.

    Samant SS, Xia J, Muyan-Ozcelik P, Owens JD.

    Med Phys. 2008 Aug;35(8):3546-53.PMID: 18777915 [PubMed - indexed for MEDLINE]Related articles

    15.

    PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results.

    He J, Dai X, Zhao X.

    BMC Bioinformatics. 2007 Feb 9;8:53.PMID: 17291345 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Fast and accurate short read alignment with Burrows-Wheeler transform.

    Li H, Durbin R.

    Bioinformatics. 2009 Jul 15;25(14):1754-60. Epub 2009 May 18.PMID: 19451168 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Optimal spliced alignments of short sequence reads.

    De Bona F, Ossowski S, Schneeberger K, Rätsch G.

    Bioinformatics. 2008 Aug 15;24(16):i174-80.PMID: 18689821 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Sense from sequence reads: methods for alignment and assembly.

    Flicek P, Birney E.

    Nat Methods. 2009 Nov;6(11 Suppl):S6-S12. Review.PMID: 19844229 [PubMed - indexed for MEDLINE]Related articles

    19.

    Fast algorithms for large-scale genome alignment and comparison.

    Delcher AL, Phillippy A, Carlton J, Salzberg SL.

    Nucleic Acids Res. 2002 Jun 1;30(11):2478-83.PMID: 12034836 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae.

    Reinhardt JA, Baltrus DA, Nishimura MT, Jeck WR, Jones CD, Dangl JL.

    Genome Res. 2009 Feb;19(2):294-305. Epub 2008 Nov 17.PMID: 19015323 [PubMed - indexed for MEDLINE]Related articlesFree article

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