PubMed

The JSpecView Project: an Open Source Java viewer and converter for JCAMP-DX, and XML spectral data files.

Lancashire RJ.

Chem Cent J. 2007 Dec 7;1:31.PMID: 18067663 [PubMed]Free PMC ArticleFree textRelated citations

The Spectral Game: leveraging Open Data and crowdsourcing for education.

Bradley JC, Lancashire RJ, Lang AS, Williams AJ.

J Cheminform. 2009 Jun 26;1(1):9.PMID: 20298527 [PubMed - in process]Free ArticleRelated citations

Java applets for viewing one- and two-dimensional NMR spectra.

Sharman GJ.

Magn Reson Chem. 2006 Nov;44(11):1008-12.PMID: 16941576 [PubMed - indexed for MEDLINE]Related citations

RGG: a general GUI Framework for R scripts.

Visne I, Dilaveroglu E, Vierlinger K, Lauss M, Yildiz A, Weinhaeusel A, Noehammer C, Leisch F, Kriegner A.

BMC Bioinformatics. 2009 Mar 2;10:74.PMID: 19254356 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

An informatic pipeline for the data capture and submission of quantitative proteomic data using iTRAQ.

Siepen JA, Swainston N, Jones AR, Hart SR, Hermjakob H, Jones P, Hubbard SJ.

Proteome Sci. 2007 Feb 1;5:4.PMID: 17270041 [PubMed]Free PMC ArticleFree textRelated citations

Caryoscope: an Open Source Java application for viewing microarray data in a genomic context.

Awad IA, Rees CA, Hernandez-Boussard T, Ball CA, Sherlock G.

BMC Bioinformatics. 2004 Oct 15;5:151.PMID: 15488149 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Technical development of PubMed interact: an improved interface for MEDLINE/PubMed searches.

Muin M, Fontelo P.

BMC Med Inform Decis Mak. 2006 Nov 3;6:36.PMID: 17083729 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Janocchio--a Java applet for viewing 3D structures and calculating NMR couplings and NOEs.

Evans DA, Bodkin MJ, Baker SR, Sharman GJ.

Magn Reson Chem. 2007 Jul;45(7):595-600.PMID: 17534870 [PubMed - indexed for MEDLINE]Related citations

GDPC: connecting researchers with multiple integrated data sources.

Casstevens TM, Buckler ES.

Bioinformatics. 2004 Nov 1;20(16):2839-40. Epub 2004 Apr 22.PMID: 15105279 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

MoldaNet: a network distributed molecular graphics and modelling program that integrates secure signed applet and Java 3D technologies.

Yoshida H, Rzepa HS, Tonge AP.

J Mol Graph Model. 1998 Jun;16(3):144-9.PMID: 10434254 [PubMed - indexed for MEDLINE]Related citations

JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases.

Feng G, Burton N, Hill B, Davidson D, Kerwin J, Scott M, Lindsay S, Baldock R.

BMC Bioinformatics. 2005 Mar 9;6:47.PMID: 15757508 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

Design and implementation of a portal for the medical equipment market: MEDICOM.

Palamas S, Kalivas D, Panou-Diamandi O, Zeelenberg C, van Nimwegen C.

J Med Internet Res. 2001 Oct-Dec;3(4):E32.PMID: 11772547 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

ProteomeCommons.org IO Framework: reading and writing multiple proteomics data formats.

Falkner JA, Falkner JW, Andrews PC.

Bioinformatics. 2007 Jan 15;23(2):262-3. Epub 2006 Nov 22.PMID: 17121776 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

Bioclipse 2: a scriptable integration platform for the life sciences.

Spjuth O, Alvarsson J, Berg A, Eklund M, Kuhn S, Mäsak C, Torrance G, Wagener J, Willighagen EL, Steinbeck C, Wikberg JE.

BMC Bioinformatics. 2009 Dec 3;10:397.PMID: 19958528 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

SPECTRa: the deposition and validation of primary chemistry research data in digital repositories.

Downing J, Murray-Rust P, Tonge AP, Morgan P, Rzepa HS, Cotterill F, Day N, Harvey MJ.

J Chem Inf Model. 2008 Aug;48(8):1571-81. Epub 2008 Jul 29.PMID: 18661966 [PubMed - indexed for MEDLINE]Related citations

Pedro: a configurable data entry tool for XML.

Garwood KL, Taylor CF, Runte KJ, Brass A, Oliver SG, Paton NW.

Bioinformatics. 2004 Oct 12;20(15):2463-5. Epub 2004 Apr 8.PMID: 15073025 [PubMed - indexed for MEDLINE]Free ArticleRelated citations

OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.

Beauheim CC, Wymore F, Nitzberg M, Zachariah ZK, Jin H, Skene JH, Ball CA, Sherlock G.

BMC Bioinformatics. 2007 Sep 13;8:338.PMID: 17854506 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

TOPPView: an open-source viewer for mass spectrometry data.

Sturm M, Kohlbacher O.

J Proteome Res. 2009 Jul;8(7):3760-3.PMID: 19425593 [PubMed - indexed for MEDLINE]Related citations

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.PMID: 17123449 [PubMed - indexed for MEDLINE]Free PMC ArticleFree textRelated citations

OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results.

Barsnes H, Huber S, Sickmann A, Eidhammer I, Martens L.

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