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    Results: 1 to 20 of 129

    1.

    Broad network-based predictability of Saccharomyces cerevisiae gene loss-of-function phenotypes.

    McGary KL, Lee I, Marcotte EM.

    Genome Biol. 2007;8(12):R258.

    PMID:
    18053250
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Construction and application of a protein and genetic interaction network (yeast interactome).

    Stuart GR, Copeland WC, Strand MK.

    Nucleic Acids Res. 2009 Apr;37(7):e54. Epub 2009 Mar 9.

    PMID:
    19273534
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    The genetic landscape of a cell.

    Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C.

    Science. 2010 Jan 22;327(5964):425-31.

    PMID:
    20093466
    [PubMed - indexed for MEDLINE]
    4.

    Network hubs buffer environmental variation in Saccharomyces cerevisiae.

    Levy SF, Siegal ML.

    PLoS Biol. 2008 Nov 4;6(11):e264.

    PMID:
    18986213
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    One hub-one process: a tool based view on regulatory network topology.

    Axelsen JB, Bernhardsson S, Sneppen K.

    BMC Syst Biol. 2008 Mar 4;2:25.

    PMID:
    18318890
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Transcriptional regulatory networks in Saccharomyces cerevisiae.

    Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

    Science. 2002 Oct 25;298(5594):799-804.

    PMID:
    12399584
    [PubMed - indexed for MEDLINE]
    7.

    Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression.

    Boorsma A, Lu XJ, Zakrzewska A, Klis FM, Bussemaker HJ.

    PLoS One. 2008 Sep 3;3(9):e3112.

    PMID:
    18769540
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Genomewide screen reveals a wide regulatory network for di/tripeptide utilization in Saccharomyces cerevisiae.

    Cai H, Kauffman S, Naider F, Becker JM.

    Genetics. 2006 Mar;172(3):1459-76. Epub 2005 Dec 15.

    PMID:
    16361226
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Building and analysing genome-wide gene disruption networks.

    Rung J, Schlitt T, Brazma A, Freivalds K, Vilo J.

    Bioinformatics. 2002;18 Suppl 2:S202-10.

    PMID:
    12386004
    [PubMed - indexed for MEDLINE]
    Free Article
    11.

    Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function.

    Tian W, Zhang LV, Taşan M, Gibbons FD, King OD, Park J, Wunderlich Z, Cherry JM, Roth FP.

    Genome Biol. 2008;9 Suppl 1:S7. Epub 2008 Jun 27.

    PMID:
    18613951
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Functional genomics and proteomics: charting a multidimensional map of the yeast cell.

    Bader GD, Heilbut A, Andrews B, Tyers M, Hughes T, Boone C.

    Trends Cell Biol. 2003 Jul;13(7):344-56. Review.

    PMID:
    12837605
    [PubMed - indexed for MEDLINE]
    13.

    Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.

    Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM.

    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D442-5.

    PMID:
    16381907
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Gene function prediction from synthetic lethality networks via ranking on demand.

    Lippert C, Ghahramani Z, Borgwardt KM.

    Bioinformatics. 2010 Apr 1;26(7):912-8. Epub 2010 Feb 12.

    PMID:
    20154010
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    Mechanisms of cell cycle control revealed by a systematic and quantitative overexpression screen in S. cerevisiae.

    Niu W, Li Z, Zhan W, Iyer VR, Marcotte EM.

    PLoS Genet. 2008 Jul 11;4(7):e1000120.

    PMID:
    18617996
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    An improved, bias-reduced probabilistic functional gene network of baker's yeast, Saccharomyces cerevisiae.

    Lee I, Li Z, Marcotte EM.

    PLoS One. 2007 Oct 3;2(10):e988.

    PMID:
    17912365
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Mapping pathways and phenotypes by systematic gene overexpression.

    Sopko R, Huang D, Preston N, Chua G, Papp B, Kafadar K, Snyder M, Oliver SG, Cyert M, Hughes TR, Boone C, Andrews B.

    Mol Cell. 2006 Feb 3;21(3):319-30.

    PMID:
    16455487
    [PubMed - indexed for MEDLINE]
    18.

    Interaction networks: lessons from large-scale studies in yeast.

    Cagney G.

    Proteomics. 2009 Oct;9(20):4799-811. Review.

    PMID:
    19743423
    [PubMed - indexed for MEDLINE]
    19.

    Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

    Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

    Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.

    PMID:
    15044243
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    Genome-wide analysis of iron-dependent growth reveals a novel yeast gene required for vacuolar acidification.

    Davis-Kaplan SR, Ward DM, Shiflett SL, Kaplan J.

    J Biol Chem. 2004 Feb 6;279(6):4322-9. Epub 2003 Nov 21.

    PMID:
    14594803
    [PubMed - indexed for MEDLINE]
    Free Article

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