PubMed

Bioinformatics process management: information flow via a computational journal.

Feagan L, Rohrer J, Garrett A, Amthauer H, Komp E, Johnson D, Hock A, Clark T, Lushington G, Minden G, Frost V.

Source Code Biol Med. 2007 Dec 3;2:9.PMID: 18053179 [PubMed - in process]Related articlesFree article

SysBioMed report: advancing systems biology for medical applications.

Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I.

IET Syst Biol. 2009 May;3(3):131-6.PMID: 19449974 [PubMed - indexed for MEDLINE]Related articles

Constructing computational pipelines.

Halling-Brown M, Shepherd AJ.

Methods Mol Biol. 2008;453:451-70.PMID: 18712319 [PubMed - indexed for MEDLINE]Related articles

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542.PMID: 19087345 [PubMed - indexed for MEDLINE]Related articlesFree article

iTools: a framework for classification, categorization and integration of computational biology resources.

Dinov ID, Rubin D, Lorensen W, Dugan J, Ma J, Murphy S, Kirschner B, Bug W, Sherman M, Floratos A, Kennedy D, Jagadish HV, Schmidt J, Athey B, Califano A, Musen M, Altman R, Kikinis R, Kohane I, Delp S, Parker DS, Toga AW.

PLoS One. 2008 May 28;3(5):e2265.PMID: 18509477 [PubMed - indexed for MEDLINE]Related articlesFree article

Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group.

Mooney SD, Baenziger PH.

Brief Bioinform. 2008 Jan;9(1):69-74. Epub 2007 Dec 5. Review.PMID: 18057072 [PubMed - indexed for MEDLINE]Related articlesFree article

BioMAJ: a flexible framework for databanks synchronization and processing.

Filangi O, Beausse Y, Assi A, Legrand L, Larré JM, Martin V, Collin O, Caron C, Leroy H, Allouche D.

Bioinformatics. 2008 Aug 15;24(16):1823-5. Epub 2008 Jun 30.PMID: 18593718 [PubMed - indexed for MEDLINE]Related articlesFree article

A services oriented system for bioinformatics applications on the grid.

Aloisio G, Cafaro M, Epicoco I, Fiore S, Mirto M.

Stud Health Technol Inform. 2007;126:174-83.PMID: 17476060 [PubMed - indexed for MEDLINE]Related articles

Delivering bioinformatics training: bridging the gaps between computer science and biomedicine.

Dubay C, Brundege JM, Hersh W, Spackman K.

Proc AMIA Symp. 2002:220-4.PMID: 12463819 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolving from bioinformatics in-the-small to bioinformatics in-the-large.

Parker DS, Gorlick MM, Lee CJ.

OMICS. 2003 Spring;7(1):37-48.PMID: 12831555 [PubMed - indexed for MEDLINE]Related articles

2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments.

Allmer J, Kuhlgert S, Hippler M.

BMC Bioinformatics. 2008 Jul 7;9:302.PMID: 18605993 [PubMed - indexed for MEDLINE]Related articlesFree article

Using provenance to manage knowledge of in silico experiments.

Stevens R, Zhao J, Goble C.

Brief Bioinform. 2007 May;8(3):183-94. Epub 2007 May 14.PMID: 17502335 [PubMed - indexed for MEDLINE]Related articlesFree article

geneCBR: a translational tool for multiple-microarray analysis and integrative information retrieval for aiding diagnosis in cancer research.

Glez-Peña D, Díaz F, Hernández JM, Corchado JM, Fdez-Riverola F.

BMC Bioinformatics. 2009 Jun 18;10:187.PMID: 19538727 [PubMed - indexed for MEDLINE]Related articlesFree article

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.

Chalmel F, Primig M.

BMC Bioinformatics. 2008 Feb 6;9:86.PMID: 18254954 [PubMed - indexed for MEDLINE]Related articlesFree article

Interoperability of GADU in using heterogeneous grid resources for bioinformatics applications.

Sulakhe D, Rodriguez A, Wilde M, Foster I, Maltsev N.

IEEE Trans Inf Technol Biomed. 2008 Mar;12(2):241-6.PMID: 18348953 [PubMed - indexed for MEDLINE]Related articles

High-throughput bioinformatics with the Cyrille2 pipeline system.

Fiers MW, van der Burgt A, Datema E, de Groot JC, van Ham RC.

BMC Bioinformatics. 2008 Feb 12;9:96.PMID: 18269742 [PubMed - indexed for MEDLINE]Related articlesFree article

Adapting a geographical information system-based water resource management to the needs of the Romanian water authorities.

Soutter M, Alexandrescu M, Schenk C, Drobot R.

Environ Sci Pollut Res Int. 2009 Aug;16 Suppl 1:S33-41. Epub 2008 Nov 8.PMID: 18998185 [PubMed - indexed for MEDLINE]Related articles

BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment.

Chin G Jr, Chavarria DG, Nakamura GC, Sofia HJ.

BMC Bioinformatics. 2008 May 28;9 Suppl 6:S6.PMID: 18541059 [PubMed - indexed for MEDLINE]Related articlesFree article

Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study.

Manion FJ, Robbins RJ, Weems WA, Crowley RS.

BMC Med Inform Decis Mak. 2009 Jun 15;9:31.PMID: 19527521 [PubMed - indexed for MEDLINE]Related articlesFree article

A plant resource and experiment management system based on the Golm Plant Database as a basic tool for omics research.

Köhl KI, Basler G, Lüdemann A, Selbig J, Walther D.

Plant Methods. 2008 May 21;4:11.PMID: 18495032 [PubMed - in process]Related articlesFree article