PubMed

Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida.

Pirooznia M, Gong P, Guan X, Inouye LS, Yang K, Perkins EJ, Deng Y.

BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S7.PMID: 18047730 [PubMed - indexed for MEDLINE]Related articlesFree article

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches.

Nagaraj SH, Gasser RB, Nisbet AJ, Ranganathan S.

BMC Bioinformatics. 2008;9 Suppl 1:S10.PMID: 18315841 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation and analysis of large-scale expressed sequence tags (ESTs) from a full-length enriched cDNA library of porcine backfat tissue.

Kim TH, Kim NS, Lim D, Lee KT, Oh JH, Park HS, Jang GW, Kim HY, Jeon M, Choi BH, Lee HY, Chung HY, Kim H.

BMC Genomics. 2006 Feb 27;7:36.PMID: 16504160 [PubMed - indexed for MEDLINE]Related articlesFree article

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180.PMID: 18400082 [PubMed - indexed for MEDLINE]Related articlesFree article

Transcriptome analysis in the midgut of the earthworm (Eisenia andrei) using expressed sequence tags.

Lee MS, Cho SJ, Tak ES, Lee JA, Cho HJ, Park BJ, Shin C, Kim DK, Park SC.

Biochem Biophys Res Commun. 2005 Mar 25;328(4):1196-204.PMID: 15708003 [PubMed - indexed for MEDLINE]Related articles

Collembase: a repository for springtail genomics and soil quality assessment.

Timmermans MJ, de Boer ME, Nota B, de Boer TE, Mariën J, Klein-Lankhorst RM, van Straalen NM, Roelofs D.

BMC Genomics. 2007 Sep 27;8:341.PMID: 17900339 [PubMed - indexed for MEDLINE]Related articlesFree article

Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection.

Guo B, Chen X, Dang P, Scully BT, Liang X, Holbrook CC, Yu J, Culbreath AK.

BMC Dev Biol. 2008 Feb 4;8:12.PMID: 18248674 [PubMed - indexed for MEDLINE]Related articlesFree article

Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.

Fleury E, Huvet A, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachère E, Tanguy A, Moraga D, Fabioux C, Lindeque P, Shaw J, Reinhardt R, Prunet P, Davey G, Lapègue S, Sauvage C, Corporeau C, Moal J, Gavory F, Wincker P, Moreews F, Klopp C, Mathieu M, Boudry P, Favrel P.

BMC Genomics. 2009 Jul 29;10:341.PMID: 19640306 [PubMed - indexed for MEDLINE]Related articlesFree article

Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource.

Adzhubei AA, Vlasova AV, Hagen-Larsen H, Ruden TA, Laerdahl JK, Høyheim B.

BMC Genomics. 2007 Jul 2;8:209.PMID: 17605782 [PubMed - indexed for MEDLINE]Related articlesFree article

A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

BMC Genomics. 2008 Oct 14;9:484.PMID: 18854048 [PubMed - indexed for MEDLINE]Related articlesFree article

The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.

Lee Y, Tsai J, Sunkara S, Karamycheva S, Pertea G, Sultana R, Antonescu V, Chan A, Cheung F, Quackenbush J.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D71-4.PMID: 15608288 [PubMed - indexed for MEDLINE]Related articlesFree article

Penaeus monodon gene discovery project: the generation of an EST collection and establishment of a database.

Tassanakajon A, Klinbunga S, Paunglarp N, Rimphanitchayakit V, Udomkit A, Jitrapakdee S, Sritunyalucksana K, Phongdara A, Pongsomboon S, Supungul P, Tang S, Kuphanumart K, Pichyangkura R, Lursinsap C.

Gene. 2006 Dec 15;384:104-12. Epub 2006 Jul 28.PMID: 16945489 [PubMed - indexed for MEDLINE]Related articles

Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis.

Abernathy JW, Xu P, Li P, Xu DH, Kucuktas H, Klesius P, Arias C, Liu Z.

BMC Genomics. 2007 Jun 18;8:176.PMID: 17577414 [PubMed - indexed for MEDLINE]Related articlesFree article

ESTMAP: a system for expressed sequence tags mapping on genomic sequences.

Milanesi L, Rogozin IB.

IEEE Trans Nanobioscience. 2003 Jun;2(2):75-8.PMID: 15382662 [PubMed - indexed for MEDLINE]Related articles

CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes.

Sclep G, Allemeersch J, Liechti R, De Meyer B, Beynon J, Bhalerao R, Moreau Y, Nietfeld W, Renou JP, Reymond P, Kuiper MT, Hilson P.

BMC Bioinformatics. 2007 Oct 18;8:400.PMID: 17945016 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis and functional annotation of expressed sequence tags (ESTs) from multiple tissues of oil palm (Elaeis guineensis Jacq.).

Ho CL, Kwan YY, Choi MC, Tee SS, Ng WH, Lim KA, Lee YP, Ooi SE, Lee WW, Tee JM, Tan SH, Kulaveerasingam H, Alwee SS, Abdullah MO.

BMC Genomics. 2007 Oct 22;8:381.PMID: 17953740 [PubMed - indexed for MEDLINE]Related articlesFree article

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus.

Brendel V, Xing L, Zhu W.

Bioinformatics. 2004 May 1;20(7):1157-69. Epub 2004 Feb 5.PMID: 14764557 [PubMed - indexed for MEDLINE]Related articlesFree article

Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index.

Carre W, Wang X, Porter TE, Nys Y, Tang J, Bernberg E, Morgan R, Burnside J, Aggrey SE, Simon J, Cogburn LA.

Physiol Genomics. 2006 May 16;25(3):514-24. Epub 2006 Mar 22.PMID: 16554550 [PubMed - indexed for MEDLINE]Related articlesFree article

NemaPath: online exploration of KEGG-based metabolic pathways for nematodes.

Wylie T, Martin J, Abubucker S, Yin Y, Messina D, Wang Z, McCarter JP, Mitreva M.

BMC Genomics. 2008 Nov 4;9:525.PMID: 18983679 [PubMed - indexed for MEDLINE]Related articlesFree article