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    Results: 1 to 20 of 123

    1.

    The global landscape of sequence diversity.

    Peregrín-Alvarez JM, Parkinson J.

    Genome Biol. 2007;8(11):R238.

    PMID:
    17996061
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Phylogenomic analysis of EST datasets.

    Peregrín-Alvarez JM, Parkinson J.

    Methods Mol Biol. 2009;533:257-76.

    PMID:
    19277568
    [PubMed - indexed for MEDLINE]
    3.

    Genomic structure and expression of Jmjd6 and evolutionary analysis in the context of related JmjC domain containing proteins.

    Hahn P, Böse J, Edler S, Lengeling A.

    BMC Genomics. 2008 Jun 18;9:293.

    PMID:
    18564434
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.

    Yavatkar AS, Lin Y, Ross J, Fann Y, Brody T, Odenwald WF.

    BMC Genomics. 2008 Feb 28;9:106.

    PMID:
    18307801
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Evolution of the multifaceted eukaryotic akirin gene family.

    Macqueen DJ, Johnston IA.

    BMC Evol Biol. 2009 Feb 6;9:34.

    PMID:
    19200367
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes.

    Rasmussen MD, Kellis M.

    Genome Res. 2007 Dec;17(12):1932-42. Epub 2007 Nov 7.

    PMID:
    17989260
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Microbial ecology in the age of genomics and metagenomics: concepts, tools, and recent advances.

    Xu J.

    Mol Ecol. 2006 Jun;15(7):1713-31. Review.

    PMID:
    16689892
    [PubMed - indexed for MEDLINE]
    9.

    Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment.

    Jothi R, Przytycka TM, Aravind L.

    BMC Bioinformatics. 2007 May 23;8:173.

    PMID:
    17521444
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Comparative analysis of function and interaction of transcription factors in nematodes: extensive conservation of orthology coupled to rapid sequence evolution.

    Haerty W, Artieri C, Khezri N, Singh RS, Gupta BP.

    BMC Genomics. 2008 Aug 27;9:399.

    PMID:
    18752680
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Stratification of co-evolving genomic groups using ranked phylogenetic profiles.

    Freilich S, Goldovsky L, Gottlieb A, Blanc E, Tsoka S, Ouzounis CA.

    BMC Bioinformatics. 2009 Oct 27;10:355.

    PMID:
    19860884
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.

    Rogozin IB, Makarova KS, Wolf YI, Koonin EV.

    Brief Bioinform. 2004 Jun;5(2):131-49.

    PMID:
    15260894
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    Reconstructing the phylogenetic relationships of the earth's most diverse clade of freshwater fishes--order Cypriniformes (Actinopterygii: Ostariophysi): a case study using multiple nuclear loci and the mitochondrial genome.

    Mayden RL, Chen WJ, Bart HL, Doosey MH, Simons AM, Tang KL, Wood RM, Agnew MK, Yang L, Hirt MV, Clements MD, Saitoh K, Sado T, Miya M, Nishida M.

    Mol Phylogenet Evol. 2009 Jun;51(3):500-14. Epub 2008 Dec 25.

    PMID:
    19141325
    [PubMed - indexed for MEDLINE]
    14.

    Qualifying the relationship between sequence conservation and molecular function.

    Cooper GM, Brown CD.

    Genome Res. 2008 Feb;18(2):201-5.

    PMID:
    18245453
    [PubMed - indexed for MEDLINE]
    Free Article
    15.

    Phylogenetic inference using whole genomes.

    Rannala B, Yang Z.

    Annu Rev Genomics Hum Genet. 2008;9:217-31. Review.

    PMID:
    18767964
    [PubMed - indexed for MEDLINE]
    16.

    The phylogenetic diversity of eukaryotic transcription.

    Coulson RM, Ouzounis CA.

    Nucleic Acids Res. 2003 Jan 15;31(2):653-60.

    PMID:
    12527774
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes.

    Goode DL, Cooper GM, Schmutz J, Dickson M, Gonzales E, Tsai M, Karra K, Davydov E, Batzoglou S, Myers RM, Sidow A.

    Genome Res. 2010 Mar;20(3):301-10. Epub 2010 Jan 12.

    PMID:
    20067941
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    18.

    The conservation and evolutionary modularity of metabolism.

    Peregrín-Alvarez JM, Sanford C, Parkinson J.

    Genome Biol. 2009;10(6):R63. Epub 2009 Jun 12.

    PMID:
    19523219
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    The repertoire of G protein-coupled receptors in the sea squirt Ciona intestinalis.

    Kamesh N, Aradhyam GK, Manoj N.

    BMC Evol Biol. 2008 May 1;8:129.

    PMID:
    18452600
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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