PubMed

TreeViewJ: An application for viewing and analyzing phylogenetic trees.

Peterson MW, Colosimo ME.

Source Code Biol Med. 2007 Oct 31;2:7.PMID: 17974028 [PubMed - in process]Related articlesFree article

Taxonomic colouring of phylogenetic trees of protein sequences.

Palidwor G, Reynaud EG, Andrade-Navarro MA.

BMC Bioinformatics. 2006 Feb 17;7:79.PMID: 16503967 [PubMed - indexed for MEDLINE]Related articlesFree article

Dendroscope: An interactive viewer for large phylogenetic trees.

Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R.

BMC Bioinformatics. 2007 Nov 22;8:460.PMID: 18034891 [PubMed - indexed for MEDLINE]Related articlesFree article

TreeGraph 2: combining and visualizing evidence from different phylogenetic analyses.

Stöver BC, Müller KF.

BMC Bioinformatics. 2010 Jan 5;11:7.PMID: 20051126 [PubMed - in process]Related articlesFree article

PhyloExplorer: a web server to validate, explore and query phylogenetic trees.

Ranwez V, Clairon N, Delsuc F, Pourali S, Auberval N, Diser S, Berry V.

BMC Evol Biol. 2009 May 18;9:108.PMID: 19450253 [PubMed - indexed for MEDLINE]Related articlesFree article

T-REX: reconstructing and visualizing phylogenetic trees and reticulation networks.

Makarenkov V.

Bioinformatics. 2001 Jul;17(7):664-8.PMID: 11448889 [PubMed - indexed for MEDLINE]Related articlesFree article

Apollo: a community resource for genome annotation editing.

Ed L, Nomi H, Mark G, Raymond C, Suzanna L.

Bioinformatics. 2009 Jul 15;25(14):1836-7. Epub 2009 May 13.PMID: 19439563 [PubMed - indexed for MEDLINE]Related articlesFree article

primetv: a viewer for reconciled trees.

Sennblad B, Schreil E, Berglund Sonnhammer AC, Lagergren J, Arvestad L.

BMC Bioinformatics. 2007 May 7;8:148.PMID: 17484781 [PubMed - indexed for MEDLINE]Related articlesFree article

TreeDyn: towards dynamic graphics and annotations for analyses of trees.

Chevenet F, Brun C, Bañuls AL, Jacq B, Christen R.

BMC Bioinformatics. 2006 Oct 10;7:439.PMID: 17032440 [PubMed - indexed for MEDLINE]Related articlesFree article

Analysis and visualization of tree space.

Hillis DM, Heath TA, St John K.

Syst Biol. 2005 Jun;54(3):471-82.PMID: 16012112 [PubMed - indexed for MEDLINE]Related articles

PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.

Than C, Ruths D, Nakhleh L.

BMC Bioinformatics. 2008 Jul 28;9:322.PMID: 18662388 [PubMed - indexed for MEDLINE]Related articlesFree article

PADRE: a package for analyzing and displaying reticulate evolution.

Lott M, Spillner A, Huber KT, Moulton V.

Bioinformatics. 2009 May 1;25(9):1199-200. Epub 2009 Mar 5.PMID: 19269989 [PubMed - indexed for MEDLINE]Related articles

SNAVI: Desktop application for analysis and visualization of large-scale signaling networks.

Ma'ayan A, Jenkins SL, Webb RL, Berger SI, Purushothaman SP, Abul-Husn NS, Posner JM, Flores T, Iyengar R.

BMC Syst Biol. 2009 Jan 20;3:10.PMID: 19154595 [PubMed - indexed for MEDLINE]Related articlesFree article

PhyloFinder: an intelligent search engine for phylogenetic tree databases.

Chen D, Burleigh JG, Bansal MS, Fernández-Baca D.

BMC Evol Biol. 2008 Mar 21;8:90.PMID: 18366717 [PubMed - indexed for MEDLINE]Related articlesFree article

Trees of trees: an approach to comparing multiple alternative phylogenies.

Nye TM.

Syst Biol. 2008 Oct;57(5):785-94.PMID: 18853364 [PubMed - indexed for MEDLINE]Related articles

BEAST: Bayesian evolutionary analysis by sampling trees.

Drummond AJ, Rambaut A.

BMC Evol Biol. 2007 Nov 8;7:214.PMID: 17996036 [PubMed - indexed for MEDLINE]Related articlesFree article

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PMID: 20228129

A perl package and an alignment tool for phylogenetic networks.

Cardona G, Rosselló F, Valiente G.

BMC Bioinformatics. 2008 Mar 27;9:175.PMID: 18371228 [PubMed - indexed for MEDLINE]Related articlesFree article

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170.PMID: 18366802 [PubMed - indexed for MEDLINE]Related articlesFree article

Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool.

Dalevi D, Desantis TZ, Fredslund J, Andersen GL, Markowitz VM, Hugenholtz P.

BMC Bioinformatics. 2007 Oct 18;8:402.PMID: 17949484 [PubMed - indexed for MEDLINE]Related articlesFree article