PubMed

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors.

Stajich JE, Dietrich FS, Roy SW.

Genome Biol. 2007;8(10):R223.PMID: 17949488 [PubMed - indexed for MEDLINE]Related articlesFree article

Intron-rich ancestors.

Roy SW.

Trends Genet. 2006 Sep;22(9):468-71. Epub 2006 Jul 20. Review.PMID: 16857287 [PubMed - indexed for MEDLINE]Related articles

Analysis of evolution of exon-intron structure of eukaryotic genes.

Rogozin IB, Sverdlov AV, Babenko VN, Koonin EV.

Brief Bioinform. 2005 Jun;6(2):118-34. Review.PMID: 15975222 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome.

Irimia M, Roy SW.

PLoS Genet. 2008 Aug 8;4(8):e1000148.PMID: 18688272 [PubMed - indexed for MEDLINE]Related articlesFree article

The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?

Koonin EV.

Biol Direct. 2006 Aug 14;1:22.PMID: 16907971 [PubMed]Related articlesFree article

A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain.

Roy SW, Penny D.

Mol Biol Evol. 2007 Jul;24(7):1447-57. Epub 2007 Mar 8.PMID: 17350938 [PubMed - indexed for MEDLINE]Related articlesFree article

Intron-dominated genomes of early ancestors of eukaryotes.

Koonin EV.

J Hered. 2009 Sep-Oct;100(5):618-23. Epub 2009 Jul 17. Review.PMID: 19617525 [PubMed - indexed for MEDLINE]Related articles

The evolution of spliceosomal introns: patterns, puzzles and progress.

Roy SW, Gilbert W.

Nat Rev Genet. 2006 Mar;7(3):211-21. Review.PMID: 16485020 [PubMed - indexed for MEDLINE]Related articles

The evolutionary gain of spliceosomal introns: sequence and phase preferences.

Qiu WG, Schisler N, Stoltzfus A.

Mol Biol Evol. 2004 Jul;21(7):1252-63. Epub 2004 Mar 10. Erratum in: Mol Biol Evol. 2004 Sep;21(9):1812. PMID: 15014153 [PubMed - indexed for MEDLINE]Related articlesFree article

Coevolution of genomic intron number and splice sites.

Irimia M, Penny D, Roy SW.

Trends Genet. 2007 Jul;23(7):321-5. Epub 2007 Apr 18. Review.PMID: 17442445 [PubMed - indexed for MEDLINE]Related articles

Patterns of intron gain and conservation in eukaryotic genes.

Carmel L, Rogozin IB, Wolf YI, Koonin EV.

BMC Evol Biol. 2007 Oct 12;7:192.PMID: 17935625 [PubMed]Related articlesFree article

Complex early genes.

Roy SW, Gilbert W.

Proc Natl Acad Sci U S A. 2005 Feb 8;102(6):1986-91. Epub 2005 Feb 1.PMID: 15687506 [PubMed - indexed for MEDLINE]Related articlesFree article

Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing.

Irimia M, Rukov JL, Penny D, Roy SW.

BMC Evol Biol. 2007 Oct 4;7:188.PMID: 17916237 [PubMed - indexed for MEDLINE]Related articlesFree article

Widespread intron loss suggests retrotransposon activity in ancient apicomplexans.

Roy SW, Penny D.

Mol Biol Evol. 2007 Sep;24(9):1926-33. Epub 2007 May 23.PMID: 17522085 [PubMed - indexed for MEDLINE]Related articlesFree article

Rates of intron loss and gain: implications for early eukaryotic evolution.

Roy SW, Gilbert W.

Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5773-8. Epub 2005 Apr 12.PMID: 15827119 [PubMed - indexed for MEDLINE]Related articlesFree article

The evolution of spliceosomal introns.

Lynch M, Richardson AO.

Curr Opin Genet Dev. 2002 Dec;12(6):701-10. Review.PMID: 12433585 [PubMed - indexed for MEDLINE]Related articles

Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution.

Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV.

Curr Biol. 2003 Sep 2;13(17):1512-7.PMID: 12956953 [PubMed - indexed for MEDLINE]Related articles

Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach.

Csurös M, Rogozin IB, Koonin EV.

Mol Biol Evol. 2008 May;25(5):903-11. Epub 2008 Feb 21.PMID: 18296415 [PubMed - indexed for MEDLINE]Related articlesFree article

Three distinct modes of intron dynamics in the evolution of eukaryotes.

Carmel L, Wolf YI, Rogozin IB, Koonin EV.

Genome Res. 2007 Jul;17(7):1034-44. Epub 2007 May 10.PMID: 17495008 [PubMed - indexed for MEDLINE]Related articlesFree article

Intron evolution: testing hypotheses of intron evolution using the phylogenomics of tetraspanins.

Garcia-España A, Mares R, Sun TT, Desalle R.

PLoS One. 2009;4(3):e4680. Epub 2009 Mar 5.PMID: 19262691 [PubMed - indexed for MEDLINE]Related articlesFree article