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Local Renyi entropic profiles of DNA sequences.

Vinga S, Almeida JS.

BMC Bioinformatics. 2007 Oct 16;8:393.PMID: 17939871 [PubMed - indexed for MEDLINE]Related articlesFree article

Entropic Profiler - detection of conservation in genomes using information theory.

Fernandes F, Freitas AT, Almeida JS, Vinga S.

BMC Res Notes. 2009 May 5;2:72.PMID: 19416538 [PubMed - in process]Related articlesFree article

Rényi continuous entropy of DNA sequences.

Vinga S, Almeida JS.

J Theor Biol. 2004 Dec 7;231(3):377-88.PMID: 15501469 [PubMed - indexed for MEDLINE]Related articles

Entropic profiles of DNA sequences through chaos-game-derived images.

Oliver JL, Bernaola-Galván P, Guerrero-García J, Román-Roldán R.

J Theor Biol. 1993 Feb 21;160(4):457-70.PMID: 8501918 [PubMed - indexed for MEDLINE]Related articles

Universal sequence map (USM) of arbitrary discrete sequences.

Almeida JS, Vinga S.

BMC Bioinformatics. 2002;3:6. Epub 2002 Feb 5.PMID: 11895567 [PubMed - indexed for MEDLINE]Related articlesFree article

Computing distribution of scale independent motifs in biological sequences.

Almeida JS, Vinga S.

Algorithms Mol Biol. 2006 Oct 18;1:18.PMID: 17049089 [PubMed]Related articlesFree article

Counting of oligomers in sequences generated by markov chains for DNA motif discovery.

Shan G, Zheng WM.

J Bioinform Comput Biol. 2009 Feb;7(1):39-54.PMID: 19226659 [PubMed - indexed for MEDLINE]Related articles

Analysis of genomic sequences by Chaos Game Representation.

Almeida JS, Carriço JA, Maretzek A, Noble PA, Fletcher M.

Bioinformatics. 2001 May;17(5):429-37.PMID: 11331237 [PubMed - indexed for MEDLINE]Related articlesFree article

Chaos game representation for comparison of whole genomes.

Joseph J, Sasikumar R.

BMC Bioinformatics. 2006 May 5;7:243.PMID: 16677374 [PubMed - indexed for MEDLINE]Related articlesFree article

Biological sequences as pictures: a generic two dimensional solution for iterated maps.

Almeida JS, Vinga S.

BMC Bioinformatics. 2009 Mar 31;10:100.PMID: 19335894 [PubMed - indexed for MEDLINE]Related articlesFree article

Optimal word sizes for dissimilarity measures and estimation of the degree of dissimilarity between DNA sequences.

Wu TJ, Huang YH, Li LA.

Bioinformatics. 2005 Nov 15;21(22):4125-32. Epub 2005 Sep 6.PMID: 16144805 [PubMed - indexed for MEDLINE]Related articlesFree article

Efficient Boolean implementation of universal sequence maps (bUSM).

Schwacke J, Almeida JS.

BMC Bioinformatics. 2002 Oct 21;3:28.PMID: 12387731 [PubMed - indexed for MEDLINE]Related articlesFree article

Minimal entropy probability paths between genome families.

Ahlbrandt C, Benson G, Casey W.

J Math Biol. 2004 May;48(5):563-90. Epub 2003 Dec 2.PMID: 15133624 [PubMed - indexed for MEDLINE]Related articles

Sequence complexity profiles of prokaryotic genomic sequences: a fast algorithm for calculating linguistic complexity.

Troyanskaya OG, Arbell O, Koren Y, Landau GM, Bolshoy A.

Bioinformatics. 2002 May;18(5):679-88.PMID: 12050064 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical tests to compare motif count exceptionalities.

Robin S, Schbath S, Vandewalle V.

BMC Bioinformatics. 2007 Mar 8;8:84.PMID: 17346349 [PubMed - indexed for MEDLINE]Related articlesFree article

Statistical scales of order in DNA.

Poland D.

Biophys Chem. 2009 May;141(2-3):203-13. Epub 2009 Feb 20.PMID: 19254822 [PubMed - indexed for MEDLINE]Related articles

A block coding method that leads to significantly lower entropy values for the proteins and coding sections of Haemophilus influenzae.

Sampath G.

Proc IEEE Comput Soc Bioinform Conf. 2003;2:287-93.PMID: 16452804 [PubMed - indexed for MEDLINE]Related articles

Nonparametric entropy estimation using kernel densities.

Lake DE.

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SIGffRid: a tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically driven statistics.

Touzain F, Schbath S, Debled-Rennesson I, Aigle B, Kucherov G, Leblond P.

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Entropy-controlled quadratic markov measure field models for efficient image segmentation.

Rivera M, Ocegueda O, Marroquin JL.

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