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    Results: 1 to 20 of 142

    1.

    Harnessing naturally randomized transcription to infer regulatory relationships among genes.

    Chen LS, Emmert-Streib F, Storey JD.

    Genome Biol. 2007;8(10):R219.

    PMID:
    17931418
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    A duplication growth model of gene expression networks.

    Bhan A, Galas DJ, Dewey TG.

    Bioinformatics. 2002 Nov;18(11):1486-93.

    PMID:
    12424120
    [PubMed - indexed for MEDLINE]
    Free Article
    3.

    An information theoretic method for reconstructing local regulatory network modules from polymorphic samples.

    Jagalur M, Kulp D.

    Comput Syst Bioinformatics Conf. 2007;6:133-43.

    PMID:
    17951819
    [PubMed - indexed for MEDLINE]
    Free Article
    4.

    A causal inference approach for constructing transcriptional regulatory networks.

    Xing B, van der Laan MJ.

    Bioinformatics. 2005 Nov 1;21(21):4007-13. Epub 2005 Aug 30.

    PMID:
    16131521
    [PubMed - indexed for MEDLINE]
    Free Article
    5.

    Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.

    Vermeirssen V, Joshi A, Michoel T, Bonnet E, Casneuf T, Van de Peer Y.

    Mol Biosyst. 2009 Dec;5(12):1817-30. Epub 2009 Jul 17.

    PMID:
    19763340
    [PubMed - indexed for MEDLINE]
    6.

    Genetic reconstruction of a functional transcriptional regulatory network.

    Hu Z, Killion PJ, Iyer VR.

    Nat Genet. 2007 May;39(5):683-7. Epub 2007 Apr 8.

    PMID:
    17417638
    [PubMed - indexed for MEDLINE]
    7.

    Stability analysis of genetic regulatory network with additive noises.

    Jin Y, Lindsey M.

    BMC Genomics. 2008;9 Suppl 1:S21.

    PMID:
    18366611
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    A network-based method for predicting disease-causing genes.

    Karni S, Soreq H, Sharan R.

    J Comput Biol. 2009 Feb;16(2):181-9.

    PMID:
    19193144
    [PubMed - indexed for MEDLINE]
    9.

    Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations.

    Zare H, Sangurdekar D, Srivastava P, Kaveh M, Khodursky A.

    BMC Syst Biol. 2009 Apr 14;3:39.

    PMID:
    19366454
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Gene expression network reconstruction by convex feature selection when incorporating genetic perturbations.

    Logsdon BA, Mezey J.

    PLoS Comput Biol. 2010 Dec 2;6(12):e1001014.

    PMID:
    21152011
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments.

    Szczurek E, Gat-Viks I, Tiuryn J, Vingron M.

    Mol Syst Biol. 2009;5:287. Epub 2009 Jul 7.

    PMID:
    19584836
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Learning regulatory programs that accurately predict differential expression with MEDUSA.

    Kundaje A, Lianoglou S, Li X, Quigley D, Arias M, Wiggins CH, Zhang L, Leslie C.

    Ann N Y Acad Sci. 2007 Dec;1115:178-202. Epub 2007 Oct 12.

    PMID:
    17934055
    [PubMed - indexed for MEDLINE]
    13.

    An integrative approach for causal gene identification and gene regulatory pathway inference.

    Tu Z, Wang L, Arbeitman MN, Chen T, Sun F.

    Bioinformatics. 2006 Jul 15;22(14):e489-96.

    PMID:
    16873511
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    ReTRN: a retriever of real transcriptional regulatory network and expression data for evaluating structure learning algorithm.

    Li Y, Zhu Y, Bai X, Cai H, Ji W, Guo D.

    Genomics. 2009 Nov;94(5):349-54. Epub 2009 Aug 25.

    PMID:
    19712740
    [PubMed - indexed for MEDLINE]
    15.

    Regression trees for regulatory element identification.

    Phuong TM, Lee D, Lee KH.

    Bioinformatics. 2004 Mar 22;20(5):750-7. Epub 2004 Jan 29.

    PMID:
    14751992
    [PubMed - indexed for MEDLINE]
    Free Article
    16.

    Inference of gene pathways using mixture Bayesian networks.

    Ko Y, Zhai C, Rodriguez-Zas S.

    BMC Syst Biol. 2009 May 19;3:54.

    PMID:
    19454027
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Correlated fluctuations carry signatures of gene regulatory network dynamics.

    Pakka VH, PrĂ¼gel-Bennett A, Dasmahapatra S.

    J Theor Biol. 2010 Oct 7;266(3):343-57. Epub 2010 Jul 7.

    PMID:
    20619272
    [PubMed - indexed for MEDLINE]
    18.

    Heuristic approach to sparse approximation of gene regulatory networks.

    Andrecut M, Huang S, Kauffman SA.

    J Comput Biol. 2008 Nov;15(9):1173-86.

    PMID:
    18844584
    [PubMed - indexed for MEDLINE]
    19.

    Reverse-engineering transcriptional modules from gene expression data.

    Michoel T, De Smet R, Joshi A, Marchal K, Van de Peer Y.

    Ann N Y Acad Sci. 2009 Mar;1158:36-43.

    PMID:
    19348630
    [PubMed - indexed for MEDLINE]
    20.

    Inferring Boolean networks with perturbation from sparse gene expression data: a general model applied to the interferon regulatory network.

    Yu L, Watterson S, Marshall S, Ghazal P.

    Mol Biosyst. 2008 Oct;4(10):1024-30. Epub 2008 Aug 26.

    PMID:
    19082142
    [PubMed - indexed for MEDLINE]
    Free Article

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