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Quantifying raft proteins in neonatal mouse brain by 'tube-gel' protein digestion label-free shotgun proteomics.

Yu H, Wakim B, Li M, Halligan B, Tint GS, Patel SB.

Proteome Sci. 2007 Sep 24;5:17.PMID: 17892558 [PubMed - in process]Related articlesFree article

Lipid raft proteomics: analysis of in-solution digest of sodium dodecyl sulfate-solubilized lipid raft proteins by liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry.

Li N, Shaw AR, Zhang N, Mak A, Li L.

Proteomics. 2004 Oct;4(10):3156-66.PMID: 15378691 [PubMed - indexed for MEDLINE]Related articles

Tube-gel digestion: a novel proteomic approach for high throughput analysis of membrane proteins.

Lu X, Zhu H.

Mol Cell Proteomics. 2005 Dec;4(12):1948-58. Epub 2005 Sep 8.PMID: 16150870 [PubMed - indexed for MEDLINE]Related articlesFree article

Liquid chromatography electrospray ionization and matrix-assisted laser desorption ionization tandem mass spectrometry for the analysis of lipid raft proteome of monocytes.

Zhang N, Shaw AR, Li N, Chen R, Mak A, Hu X, Young N, Wishart D, Li L.

Anal Chim Acta. 2008 Oct 3;627(1):82-90. Epub 2008 Jun 17.PMID: 18790130 [PubMed - indexed for MEDLINE]Related articles

Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment.

Wang H, Qian WJ, Chin MH, Petyuk VA, Barry RC, Liu T, Gritsenko MA, Mottaz HM, Moore RJ, Camp Ii DG, Khan AH, Smith DJ, Smith RD.

J Proteome Res. 2006 Feb;5(2):361-9.PMID: 16457602 [PubMed - indexed for MEDLINE]Related articlesFree article

A straightforward and highly efficient precipitation/on-pellet digestion procedure coupled with a long gradient nano-LC separation and Orbitrap mass spectrometry for label-free expression profiling of the swine heart mitochondrial proteome.

Duan X, Young R, Straubinger RM, Page B, Cao J, Wang H, Yu H, Canty JM, Qu J.

J Proteome Res. 2009 Jun;8(6):2838-50.PMID: 19290621 [PubMed - indexed for MEDLINE]Related articlesFree article

High recovery HPLC separation of lipid rafts for membrane proteome analysis.

Martosella J, Zolotarjova N, Liu H, Moyer SC, Perkins PD, Boyes BE.

J Proteome Res. 2006 Jun;5(6):1301-12.PMID: 16739982 [PubMed - indexed for MEDLINE]Related articles

Isotope coded protein label quantification of serum proteins--comparison with the label-free LC-MS and validation using the MRM approach.

Turtoi A, Mazzucchelli GD, De Pauw E.

Talanta. 2010 Feb 15;80(4):1487-95. Epub 2009 Jul 25.PMID: 20082806 [PubMed - in process]Related articles

Characterization and comparison of raft-like membranes isolated by two different methods from rat submandibular gland cells.

García-Marcos M, Pochet S, Tandel S, Fontanils U, Astigarraga E, Fernández-González JA, Kumps A, Marino A, Dehaye JP.

Biochim Biophys Acta. 2006 Jun;1758(6):796-806. Epub 2006 May 17.PMID: 16842738 [PubMed - indexed for MEDLINE]Related articles

Temporal proteomics profiling of lipid rafts in CCR6-activated T cells reveals the integration of actin cytoskeleton dynamics.

Lin SL, Chien CW, Han CL, Chen ES, Kao SH, Chen YJ, Liao F.

J Proteome Res. 2010 Jan;9(1):283-97.PMID: 19928914 [PubMed - in process]Related articles

Simple and robust two-layer matrix/sample preparation method for MALDI MS/MS analysis of peptides.

Zheng J, Li N, Ridyard M, Dai H, Robbins SM, Li L.

J Proteome Res. 2005 Sep-Oct;4(5):1709-16.PMID: 16212424 [PubMed - indexed for MEDLINE]Related articles

High-throughput analysis of rat liver plasma membrane proteome by a nonelectrophoretic in-gel tryptic digestion coupled with mass spectrometry identification.

Cao R, He Q, Zhou J, He Q, Liu Z, Wang X, Chen P, Xie J, Liang S.

J Proteome Res. 2008 Feb;7(2):535-45. Epub 2008 Jan 1.PMID: 18166008 [PubMed - indexed for MEDLINE]Related articles

The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

Braisted JC, Kuntumalla S, Vogel C, Marcotte EM, Rodrigues AR, Wang R, Huang ST, Ferlanti ES, Saeed AI, Fleischmann RD, Peterson SN, Pieper R.

BMC Bioinformatics. 2008 Dec 9;9:529.PMID: 19068132 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

Old WM, Meyer-Arendt K, Aveline-Wolf L, Pierce KG, Mendoza A, Sevinsky JR, Resing KA, Ahn NG.

Mol Cell Proteomics. 2005 Oct;4(10):1487-502. Epub 2005 Jun 23.PMID: 15979981 [PubMed - indexed for MEDLINE]Related articlesFree article

Large-scale multiplexed quantitative discovery proteomics enabled by the use of an (18)O-labeled "universal" reference sample.

Qian WJ, Liu T, Petyuk VA, Gritsenko MA, Petritis BO, Polpitiya AD, Kaushal A, Xiao W, Finnerty CC, Jeschke MG, Jaitly N, Monroe ME, Moore RJ, Moldawer LL, Davis RW, Tompkins RG, Herndon DN, Camp DG, Smith RD; Inflammation and the Host Response to Injury Large Scale Collaborative Research Program.

J Proteome Res. 2009 Jan;8(1):290-9.PMID: 19053531 [PubMed - indexed for MEDLINE]Related articlesFree article

Mass spectrometric characterization of proteins extracted from Jurkat T cell detergent-resistant membrane domains.

von Haller PD, Donohoe S, Goodlett DR, Aebersold R, Watts JD.

Proteomics. 2001 Aug;1(8):1010-21.PMID: 11683502 [PubMed - indexed for MEDLINE]Related articles

Application of displacement chromatography for the analysis of a lipid raft proteome.

Trusch M, Böhlick A, Hildebrand D, Lichtner B, Bertsch A, Kohlbacher O, Bachmann S, Schlüter H.

J Chromatogr B Analyt Technol Biomed Life Sci. 2010 Feb 1;878(3-4):309-14. Epub 2009 Nov 27.PMID: 20015709 [PubMed - in process]Related articles

Detecting differential and correlated protein expression in label-free shotgun proteomics.

Zhang B, VerBerkmoes NC, Langston MA, Uberbacher E, Hettich RL, Samatova NF.

J Proteome Res. 2006 Nov;5(11):2909-18.PMID: 17081042 [PubMed - indexed for MEDLINE]Related articles

Rapid preparation of nuclei-depleted detergent-resistant membrane fractions suitable for proteomics analysis.

Adam RM, Yang W, Di Vizio D, Mukhopadhyay NK, Steen H.

BMC Cell Biol. 2008 Jun 5;9:30.PMID: 18534013 [PubMed - indexed for MEDLINE]Related articlesFree article

MALDI/MS peptide mass fingerprinting for proteome analysis: identification of hydrophobic proteins attached to eucaryote keratinocyte cytoplasmic membrane using different matrices in concert.

Gonnet F, Lemaître G, Waksman G, Tortajada J.

Proteome Sci. 2003 May 6;1(1):2.PMID: 12769822 [PubMed - as supplied by publisher]Related articlesFree article