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    Results: 1 to 20 of 88

    1.

    Chromatin immunoprecipitation: optimization, quantitative analysis and data normalization.

    Haring M, Offermann S, Danker T, Horst I, Peterhansel C, Stam M.

    Plant Methods. 2007 Sep 24;3:11.PMID: 17892552 [PubMed - in process]Related articlesFree article

    2.

    Chromatin Immunoprecipitation Protocol for Histone Modifications and Protein-DNA Binding Analyses in Arabidopsis.

    Pien S, Grossniklaus U.

    Methods Mol Biol. 2010;631:209-20.PMID: 20204877 [PubMed - in process]Related articles

    3.

    An efficient chromatin immunoprecipitation (ChIP) protocol for studying histone modifications in Arabidopsis plants.

    Saleh A, Alvarez-Venegas R, Avramova Z.

    Nat Protoc. 2008;3(6):1018-25.PMID: 18536649 [PubMed - indexed for MEDLINE]Related articles

    4.

    Strategies for analyzing highly enriched IP-chip datasets.

    Knott SR, Viggiani CJ, Aparicio OM, Tavaré S.

    BMC Bioinformatics. 2009 Sep 22;10:305.PMID: 19772646 [PubMed - indexed for MEDLINE]Related articlesFree article

    5.

    Native chromatin immunoprecipitation (N-ChIP) and ChIP-Seq of Schistosoma mansoni: Critical experimental parameters.

    Cosseau C, Azzi A, Smith K, Freitag M, Mitta G, Grunau C.

    Mol Biochem Parasitol. 2009 Jul;166(1):70-6. Epub 2009 Mar 9.PMID: 19428675 [PubMed - indexed for MEDLINE]Related articles

    6.

    Data-driven normalization strategies for high-throughput quantitative RT-PCR.

    Mar JC, Kimura Y, Schroder K, Irvine KM, Hayashizaki Y, Suzuki H, Hume D, Quackenbush J.

    BMC Bioinformatics. 2009 Apr 19;10:110.PMID: 19374774 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    Chromatin immunoprecipitation assays: application of ChIP-on-chip for defining dynamic transcriptional mechanisms in bone cells.

    van der Deen M, Hassan MQ, Pratap J, Teplyuk NM, Young DW, Javed A, Zaidi SK, Lian JB, Montecino M, Stein JL, Stein GS, van Wijnen AJ.

    Methods Mol Biol. 2008;455:165-76.PMID: 18463819 [PubMed - indexed for MEDLINE]Related articles

    8.

    Genome-scale ChIP-chip analysis using 10,000 human cells.

    Acevedo LG, Iniguez AL, Holster HL, Zhang X, Green R, Farnham PJ.

    Biotechniques. 2007 Dec;43(6):791-7.PMID: 18251256 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans.

    Mukhopadhyay A, Deplancke B, Walhout AJ, Tissenbaum HA.

    Nat Protoc. 2008;3(4):698-709.PMID: 18388953 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Improved ChIP-chip analysis by a mixture model approach.

    Sun W, Buck MJ, Patel M, Davis IJ.

    BMC Bioinformatics. 2009 Jun 7;10:173.PMID: 19500407 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Dual agarose magnetic (DAM) ChIP.

    Balakrishnan L, Milavetz B.

    BMC Res Notes. 2009 Dec 14;2:250.PMID: 20003449 [PubMed - in process]Related articlesFree article

    12.

    Microplate-based chromatin immunoprecipitation method, Matrix ChIP: a platform to study signaling of complex genomic events.

    Flanagin S, Nelson JD, Castner DG, Denisenko O, Bomsztyk K.

    Nucleic Acids Res. 2008 Feb;36(3):e17. Epub 2008 Jan 18.PMID: 18203739 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Studying physical chromatin interactions in plants using Chromosome Conformation Capture (3C).

    Louwers M, Splinter E, van Driel R, de Laat W, Stam M.

    Nat Protoc. 2009;4(8):1216-29. Epub 2009 Jul 30.PMID: 19644461 [PubMed - indexed for MEDLINE]Related articles

    14.

    ChIP-chip to analyze the binding of replication proteins to chromatin using oligonucleotide DNA microarrays.

    Viggiani CJ, Aparicio JG, Aparicio OM.

    Methods Mol Biol. 2009;521:255-78.PMID: 19563111 [PubMed - indexed for MEDLINE]Related articles

    15.

    Sequential chromatin immunoprecipitation protocol: ChIP-reChIP.

    Furlan-Magaril M, Rincón-Arano H, Recillas-Targa F.

    Methods Mol Biol. 2009;543:253-66.PMID: 19378171 [PubMed - indexed for MEDLINE]Related articles

    16.

    A Computational Model of Quantitative Chromatin Immunoprecipitation (ChIP) Analysis.

    Xie J, Crooke PS, McKinney BA, Soltman J, Brandt SJ.

    Cancer Inform. 2008;6:137-45. Epub 2008 Mar 12.PMID: 18458756 [PubMed - in process]Related articlesFree article

    17.

    Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks.

    Nix DA, Courdy SJ, Boucher KM.

    BMC Bioinformatics. 2008 Dec 5;9:523.PMID: 19061503 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Chromosome conformation capture (from 3C to 5C) and its ChIP-based modification.

    Vassetzky Y, Gavrilov A, Eivazova E, Priozhkova I, Lipinski M, Razin S.

    Methods Mol Biol. 2009;567:171-88. Review.PMID: 19588093 [PubMed - indexed for MEDLINE]Related articles

    19.

    Chromatin immunoprecipitation assays: molecular analysis of chromatin modification and gene regulation.

    Dasgupta P, Chellappan SP.

    Methods Mol Biol. 2007;383:135-52.PMID: 18217683 [PubMed - indexed for MEDLINE]Related articles

    20.

    Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process.

    Expósito-Rodríguez M, Borges AA, Borges-Pérez A, Pérez JA.

    BMC Plant Biol. 2008 Dec 22;8:131.PMID: 19102748 [PubMed - indexed for MEDLINE]Related articlesFree article

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