PubMed

A machine learning approach for the identification of odorant binding proteins from sequence-derived properties.

Pugalenthi G, Tang K, Suganthan PN, Archunan G, Sowdhamini R.

BMC Bioinformatics. 2007 Sep 19;8:351.PMID: 17880712 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.

Song J, Yuan Z, Tan H, Huber T, Burrage K.

Bioinformatics. 2007 Dec 1;23(23):3147-54. Epub 2007 Oct 17.PMID: 17942444 [PubMed - indexed for MEDLINE]Related articlesFree article

High-throughput identification of interacting protein-protein binding sites.

Chung JL, Wang W, Bourne PE.

BMC Bioinformatics. 2007 Jun 27;8:223.PMID: 17594507 [PubMed - indexed for MEDLINE]Related articlesFree article

Predicting residue-wise contact orders in proteins by support vector regression.

Song J, Burrage K.

BMC Bioinformatics. 2006 Oct 3;7:425.PMID: 17014735 [PubMed - indexed for MEDLINE]Related articlesFree article

Quantitative prediction of mouse class I MHC peptide binding affinity using support vector machine regression (SVR) models.

Liu W, Meng X, Xu Q, Flower DR, Li T.

BMC Bioinformatics. 2006 Mar 31;7:182.PMID: 16579851 [PubMed - indexed for MEDLINE]Related articlesFree article

Improved prediction of protein-protein binding sites using a support vector machines approach.

Bradford JR, Westhead DR.

Bioinformatics. 2005 Apr 15;21(8):1487-94. Epub 2004 Dec 21.PMID: 15613384 [PubMed - indexed for MEDLINE]Related articlesFree article

Protein secondary structure prediction for a single-sequence using hidden semi-Markov models.

Aydin Z, Altunbasak Y, Borodovsky M.

BMC Bioinformatics. 2006 Mar 30;7:178.PMID: 16571137 [PubMed - indexed for MEDLINE]Related articlesFree article

SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.

Kurgan L, Cios K, Chen K.

BMC Bioinformatics. 2008 May 1;9:226.PMID: 18452616 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of DNA-binding residues from sequence features.

Wang L, Brown SJ.

J Bioinform Comput Biol. 2006 Dec;4(6):1141-58.PMID: 17245807 [PubMed - indexed for MEDLINE]Related articles

Moment invariants as shape recognition technique for comparing protein binding sites.

Sommer I, Müller O, Domingues FS, Sander O, Weickert J, Lengauer T.

Bioinformatics. 2007 Dec 1;23(23):3139-46. Epub 2007 Oct 31.PMID: 17977888 [PubMed - indexed for MEDLINE]Related articlesFree article

Learning to translate sequence and structure to function: identifying DNA binding and membrane binding proteins.

Langlois RE, Carson MB, Bhardwaj N, Lu H.

Ann Biomed Eng. 2007 Jun;35(6):1043-52. Epub 2007 Apr 13.PMID: 17436108 [PubMed - indexed for MEDLINE]Related articlesFree article

A comprehensive assessment of sequence-based and template-based methods for protein contact prediction.

Wu S, Zhang Y.

Bioinformatics. 2008 Apr 1;24(7):924-31. Epub 2008 Feb 22.PMID: 18296462 [PubMed - indexed for MEDLINE]Related articlesFree article

A novel structure-based encoding for machine-learning applied to the inference of SH3 domain specificity.

Ferraro E, Via A, Ausiello G, Helmer-Citterich M.

Bioinformatics. 2006 Oct 1;22(19):2333-9. Epub 2006 Jul 26.PMID: 16870929 [PubMed - indexed for MEDLINE]Related articlesFree article

NOXclass: prediction of protein-protein interaction types.

Zhu H, Domingues FS, Sommer I, Lengauer T.

BMC Bioinformatics. 2006 Jan 19;7:27.PMID: 16423290 [PubMed - indexed for MEDLINE]Related articlesFree article

Improved method for predicting beta-turn using support vector machine.

Zhang Q, Yoon S, Welsh WJ.

Bioinformatics. 2005 May 15;21(10):2370-4. Epub 2005 Mar 29.PMID: 15797917 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs.

Chen YZ, Tang YR, Sheng ZY, Zhang Z.

BMC Bioinformatics. 2008 Feb 18;9:101.PMID: 18282281 [PubMed - indexed for MEDLINE]Related articlesFree article

Improved residue contact prediction using support vector machines and a large feature set.

Cheng J, Baldi P.

BMC Bioinformatics. 2007 Apr 2;8:113.PMID: 17407573 [PubMed - indexed for MEDLINE]Related articlesFree article

Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.

Shamim MT, Anwaruddin M, Nagarajaram HA.

Bioinformatics. 2007 Dec 15;23(24):3320-7. Epub 2007 Nov 7.PMID: 17989092 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational identification of ubiquitylation sites from protein sequences.

Tung CW, Ho SY.

BMC Bioinformatics. 2008 Jul 15;9:310.PMID: 18625080 [PubMed - indexed for MEDLINE]Related articlesFree article

A domain-based approach to predict protein-protein interactions.

Singhal M, Resat H.

BMC Bioinformatics. 2007 Jun 13;8:199.PMID: 17567909 [PubMed - indexed for MEDLINE]Related articlesFree article