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Integrating sequence and structural biology with DAS.

Prlić A, Down TA, Kulesha E, Finn RD, Kähäri A, Hubbard TJ.

BMC Bioinformatics. 2007 Sep 12;8:333.PMID: 17850653 [PubMed - indexed for MEDLINE]Related articlesFree article

DASMI: exchanging, annotating and assessing molecular interaction data.

Blankenburg H, Finn RD, Prlić A, Jenkinson AM, Ramírez F, Emig D, Schelhorn SE, Büch J, Lengauer T, Albrecht M.

Bioinformatics. 2009 May 15;25(10):1321-8.PMID: 19420069 [PubMed - indexed for MEDLINE]Related articlesFree article

Adding some SPICE to DAS.

Prlić A, Down TA, Hubbard TJ.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii40-1.PMID: 16204122 [PubMed - indexed for MEDLINE]Related articlesFree article

Biological information: making it accessible and integrated (and trying to make sense of it).

Hubbard T.

Bioinformatics. 2002;18 Suppl 2:S140.PMID: 12385995 [PubMed - indexed for MEDLINE]Related articlesFree article

The importance of biological databases in biological discovery.

Baxevanis AD.

Curr Protoc Bioinformatics. 2006 Mar;Chapter 1:Unit 1.1. Review.PMID: 18428753 [PubMed - indexed for MEDLINE]Related articles

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.PMID: 17062145 [PubMed - indexed for MEDLINE]Related articlesFree article

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.PMID: 15723693 [PubMed - indexed for MEDLINE]Related articlesFree article

PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results.

He J, Dai X, Zhao X.

BMC Bioinformatics. 2007 Feb 9;8:53.PMID: 17291345 [PubMed - indexed for MEDLINE]Related articlesFree article

Experience using web services for biological sequence analysis.

Stockinger H, Attwood T, Chohan SN, Côté R, Cudré-Mauroux P, Falquet L, Fernandes P, Finn RD, Hupponen T, Korpelainen E, Labarga A, Laugraud A, Lima T, Pafilis E, Pagni M, Pettifer S, Phan I, Rahman N.

Brief Bioinform. 2008 Nov;9(6):493-505. Epub 2008 Jul 11.PMID: 18621748 [PubMed - indexed for MEDLINE]Related articles

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.PMID: 17445272 [PubMed - indexed for MEDLINE]Related articlesFree article

CoGenT++: an extensive and extensible data environment for computational genomics.

Goldovsky L, Janssen P, Ahrén D, Audit B, Cases I, Darzentas N, Enright AJ, López-Bigas N, Peregrin-Alvarez JM, Smith M, Tsoka S, Kunin V, Ouzounis CA.

Bioinformatics. 2005 Oct 1;21(19):3806-10.PMID: 16216832 [PubMed - indexed for MEDLINE]Related articlesFree article

Annotation and visualization of endogenous retroviral sequences using the Distributed Annotation System (DAS) and eBioX.

Barrio AM, Lagercrantz E, Sperber GO, Blomberg J, Bongcam-Rudloff E.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S18.PMID: 19534743 [PubMed - indexed for MEDLINE]Related articlesFree article

Integrating protein annotation resources through the Distributed Annotation System.

Olason PI.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W468-70.PMID: 15980514 [PubMed - indexed for MEDLINE]Related articlesFree article

A Chado case study: an ontology-based modular schema for representing genome-associated biological information.

Mungall CJ, Emmert DB; FlyBase Consortium.

Bioinformatics. 2007 Jul 1;23(13):i337-46.PMID: 17646315 [PubMed - indexed for MEDLINE]Related articlesFree article

CBS Genome Atlas Database: a dynamic storage for bioinformatic results and sequence data.

Hallin PF, Ussery DW.

Bioinformatics. 2004 Dec 12;20(18):3682-6. Epub 2004 Jul 15.PMID: 15256401 [PubMed - indexed for MEDLINE]Related articlesFree article

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.PMID: 17044936 [PubMed - indexed for MEDLINE]Related articlesFree article

Using the Ensembl genome server to browse genomic sequence data.

Fernández-Suárez XM, Schuster MK.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.15.PMID: 18428779 [PubMed - indexed for MEDLINE]Related articles

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.PMID: 17980028 [PubMed - indexed for MEDLINE]Related articlesFree article

G-InforBIO: integrated system for microbial genomics.

Tanaka N, Abe T, Miyazaki S, Sugawara H.

BMC Bioinformatics. 2006 Aug 4;7:368.PMID: 16887044 [PubMed - indexed for MEDLINE]Related articlesFree article

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.PMID: 16603075 [PubMed - indexed for MEDLINE]Related articlesFree article