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    Results: 1 to 20 of 164

    1.

    Metabolic peculiarities of Aspergillus niger disclosed by comparative metabolic genomics.

    Sun J, Lu X, Rinas U, Zeng AP.

    Genome Biol. 2007;8(9):R182.

    PMID:
    17784953
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.

    Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen ML, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro H, Pangilinan J, Salamov A, Lou Y, Lindquist E, Lucas S, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE.

    Genome Res. 2011 Jun;21(6):885-97. Epub 2011 May 4.

    PMID:
    21543515
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae.

    Vongsangnak W, Olsen P, Hansen K, Krogsgaard S, Nielsen J.

    BMC Genomics. 2008 May 23;9:245.

    PMID:
    18500999
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger.

    Andersen MR, Nielsen ML, Nielsen J.

    Mol Syst Biol. 2008;4:178. Epub 2008 Mar 25.

    PMID:
    18364712
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    5.

    Generation, annotation, and analysis of an extensive Aspergillus niger EST collection.

    Semova N, Storms R, John T, Gaudet P, Ulycznyj P, Min XJ, Sun J, Butler G, Tsang A.

    BMC Microbiol. 2006 Feb 2;6:7.

    PMID:
    16457709
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    Reconstruction of the central carbon metabolism of Aspergillus niger.

    David H, Akesson M, Nielsen J.

    Eur J Biochem. 2003 Nov;270(21):4243-53.

    PMID:
    14622289
    [PubMed - indexed for MEDLINE]
    Free Article
    7.

    Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger.

    Guillemette T, van Peij NN, Goosen T, Lanthaler K, Robson GD, van den Hondel CA, Stam H, Archer DB.

    BMC Genomics. 2007 Jun 11;8:158.

    PMID:
    17561995
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Properties of Aspergillus niger citrate synthase and effects of citA overexpression on citric acid production.

    Ruijter GJ, Panneman H, Xu D, Visser J.

    FEMS Microbiol Lett. 2000 Mar 1;184(1):35-40.

    PMID:
    10689162
    [PubMed - indexed for MEDLINE]
    9.

    Aspergillus niger genomics: past, present and into the future.

    Baker SE.

    Med Mycol. 2006 Sep;44 Suppl 1:S17-21. Review.

    PMID:
    17050415
    [PubMed - indexed for MEDLINE]
    10.

    Identification of genes associated with morphology in Aspergillus niger by using suppression subtractive hybridization.

    Dai Z, Mao X, Magnuson JK, Lasure LL.

    Appl Environ Microbiol. 2004 Apr;70(4):2474-85.

    PMID:
    15066846
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Final Report on Carcinogens Background Document for Formaldehyde.

    National Toxicology Program.

    Rep Carcinog Backgr Doc. 2010 Jan;(10-5981):i-512.

    PMID:
    20737003
    [PubMed - as supplied by publisher]
    12.

    Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger.

    Yuan XL, Goosen C, Kools H, van der Maarel MJ, van den Hondel CA, Dijkhuizen L, Ram AF.

    Microbiology. 2006 Oct;152(Pt 10):3061-73.

    PMID:
    17005986
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties.

    Melzer G, Esfandabadi ME, Franco-Lara E, Wittmann C.

    BMC Syst Biol. 2009 Dec 25;3:120.

    PMID:
    20035624
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    14.

    Systemic analysis of the response of Aspergillus niger to ambient pH.

    Andersen MR, Lehmann L, Nielsen J.

    Genome Biol. 2009;10(5):R47. Epub 2009 May 1.

    PMID:
    19409083
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    15.

    Genomics reveals traces of fungal phenylpropanoid-flavonoid metabolic pathway in the f ilamentous fungus Aspergillus oryzae.

    Juvvadi PR, Seshime Y, Kitamoto K.

    J Microbiol. 2005 Dec;43(6):475-86. Review.

    PMID:
    16410762
    [PubMed - indexed for MEDLINE]
    Free Article
    16.

    Identification of modules in Aspergillus niger by gene co-expression network analysis.

    van den Berg RA, Braaksma M, van der Veen D, van der Werf MJ, Punt PJ, van der Oost J, de Graaff LH.

    Fungal Genet Biol. 2010 Jun;47(6):539-50. Epub 2010 Mar 27.

    PMID:
    20350613
    [PubMed - indexed for MEDLINE]
    17.

    Metabolism of citric acid production by Aspergillus niger: model definition, steady-state analysis and constrained optimization of citric acid production rate.

    Alvarez-Vasquez F, González-Alcón C, Torres NV.

    Biotechnol Bioeng. 2000 Oct 5;70(1):82-108.

    PMID:
    10940866
    [PubMed - indexed for MEDLINE]
    18.

    Assessment of the pectin degrading enzyme network of Aspergillus niger by functional genomics.

    Martens-Uzunova ES, Schaap PJ.

    Fungal Genet Biol. 2009 Mar;46 Suppl 1:S170-S179.

    PMID:
    19618506
    [PubMed - indexed for MEDLINE]
    19.

    Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles.

    Yuan XL, van der Kaaij RM, van den Hondel CA, Punt PJ, van der Maarel MJ, Dijkhuizen L, Ram AF.

    Mol Genet Genomics. 2008 Jun;279(6):545-61. Epub 2008 Mar 5.

    PMID:
    18320228
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    The Aspergillus niger multicopper oxidase family: analysis and overexpression of laccase-like encoding genes.

    Ramos JA, Barends S, Verhaert RM, de Graaff LH.

    Microb Cell Fact. 2011 Oct 8;10:78.

    PMID:
    21981827
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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