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    Results: 1 to 20 of 101

    1.

    Model-based analysis of two-color arrays (MA2C).

    Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS.

    Genome Biol. 2007;8(8):R178.

    PMID:
    17727723
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    Analysis of the quality of contact-pin fabricated oligonucleotide microarrays.

    Yang AX, Mejido J, Bhattacharya B, Petersen D, Han J, Kawasaki ES, Puri RK.

    Mol Biotechnol. 2006 Nov;34(3):303-15.

    PMID:
    17284778
    [PubMed - indexed for MEDLINE]
    3.

    CGHPRO -- a comprehensive data analysis tool for array CGH.

    Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

    BMC Bioinformatics. 2005 Apr 5;6:85.

    PMID:
    15807904
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    4.

    Assessing the need for sequence-based normalization in tiling microarray experiments.

    Royce TE, Rozowsky JS, Gerstein MB.

    Bioinformatics. 2007 Apr 15;23(8):988-97. Epub 2007 Mar 25.

    PMID:
    17387113
    [PubMed - indexed for MEDLINE]
    Free Article
    5.

    Normalization and centering of array-based heterologous genome hybridization based on divergent control probes.

    Darby BJ, Jones KL, Wheeler D, Herman MA.

    BMC Bioinformatics. 2011 May 21;12:183.

    PMID:
    21600029
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    6.

    The distribution and deposition algorithm for multiple oligo nucleotide arrays.

    Ning K, Leong HW.

    Genome Inform. 2006;17(2):89-99.

    PMID:
    17503382
    [PubMed - indexed for MEDLINE]
    7.

    Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays.

    Lahti L, Elo LL, Aittokallio T, Kaski S.

    IEEE/ACM Trans Comput Biol Bioinform. 2011 Jan-Mar;8(1):217-25.

    PMID:
    21071809
    [PubMed - indexed for MEDLINE]
    8.

    arrayQualityMetrics--a bioconductor package for quality assessment of microarray data.

    Kauffmann A, Gentleman R, Huber W.

    Bioinformatics. 2009 Feb 1;25(3):415-6. Epub 2008 Dec 23.

    PMID:
    19106121
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    9.

    Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods.

    GuhaThakurta D, Palomar L, Stormo GD, Tedesco P, Johnson TE, Walker DW, Lithgow G, Kim S, Link CD.

    Genome Res. 2002 May;12(5):701-12. Erratum in: Genome Res 2002 Aug;12(8):1301.

    PMID:
    11997337
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    Custom design and analysis of high-density oligonucleotide bacterial tiling microarrays.

    Thomassen GO, Rowe AD, Lagesen K, Lindvall JM, Rognes T.

    PLoS One. 2009 Jun 17;4(6):e5943.

    PMID:
    19536279
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    11.

    Efficient oligonucleotide probe selection for pan-genomic tiling arrays.

    Phillippy AM, Deng X, Zhang W, Salzberg SL.

    BMC Bioinformatics. 2009 Sep 16;10:293.

    PMID:
    19758451
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

    Bolstad BM, Irizarry RA, Astrand M, Speed TP.

    Bioinformatics. 2003 Jan 22;19(2):185-93.

    PMID:
    12538238
    [PubMed - indexed for MEDLINE]
    Free Article
    13.

    TileMap: create chromosomal map of tiling array hybridizations.

    Ji H, Wong WH.

    Bioinformatics. 2005 Sep 15;21(18):3629-36. Epub 2005 Jul 26.

    PMID:
    16046496
    [PubMed - indexed for MEDLINE]
    Free Article
    14.

    Microarray data quality control improves the detection of differentially expressed genes.

    Kauffmann A, Huber W.

    Genomics. 2010 Mar;95(3):138-42. Epub 2010 Jan 14. Review.

    PMID:
    20079422
    [PubMed - indexed for MEDLINE]
    15.

    Transcript normalization and segmentation of tiling array data.

    Zeller G, Henz SR, Laubinger S, Weigel D, Rätsch G.

    Pac Symp Biocomput. 2008:527-38.

    PMID:
    18229713
    [PubMed - indexed for MEDLINE]
    Free Article
    16.

    A statistical approach for array CGH data analysis.

    Picard F, Robin S, Lavielle M, Vaisse C, Daudin JJ.

    BMC Bioinformatics. 2005 Feb 11;6:27.

    PMID:
    15705208
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.
    18.

    A genotype calling algorithm for affymetrix SNP arrays.

    Rabbee N, Speed TP.

    Bioinformatics. 2006 Jan 1;22(1):7-12. Epub 2005 Nov 2.

    PMID:
    16267090
    [PubMed - indexed for MEDLINE]
    Free Article
    19.

    SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data.

    Price TS, Regan R, Mott R, Hedman A, Honey B, Daniels RJ, Smith L, Greenfield A, Tiganescu A, Buckle V, Ventress N, Ayyub H, Salhan A, Pedraza-Diaz S, Broxholme J, Ragoussis J, Higgs DR, Flint J, Knight SJ.

    Nucleic Acids Res. 2005 Jun 16;33(11):3455-64. Print 2005.

    PMID:
    15961730
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    20.

    An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reactions.

    Pozhitkov A, Stemshorn K, Tautz D.

    BMC Bioinformatics. 2005 Nov 29;6:281.

    PMID:
    16316462
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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