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    Results: 1 to 20 of 810

    1.

    Protein structural similarity search by Ramachandran codes.

    Lo WC, Huang PJ, Chang CH, Lyu PC.

    BMC Bioinformatics. 2007 Aug 23;8:307.PMID: 17716377 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

    Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

    BMC Bioinformatics. 2006 Oct 17;7:459.PMID: 17044936 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Blast sampling for structural and functional analyses.

    Friedrich A, Ripp R, Garnier N, Bettler E, Deléage G, Poch O, Moulinier L.

    BMC Bioinformatics. 2007 Feb 23;8:62.PMID: 17319945 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    Using relational databases for improved sequence similarity searching and large-scale genomic analyses.

    Mackey AJ, Pearson WR.

    Curr Protoc Bioinformatics. 2004 Oct;Chapter 9:Unit 9.4.PMID: 18428739 [PubMed - indexed for MEDLINE]Related articles

    5.

    Towards index-based similarity search for protein structure databases.

    Camoğlu O, Kahveci T, Singh AK.

    Proc IEEE Comput Soc Bioinform Conf. 2003;2:148-58.PMID: 16452789 [PubMed - indexed for MEDLINE]Related articles

    6.

    PSST-2.0: Protein Data Bank Sequence Search Tool.

    Ananthalakshmi P, Samayamohan K, Chokalingam C, Mayilarasi C, Sekar K.

    Appl Bioinformatics. 2005;4(2):141-5.PMID: 16128616 [PubMed - indexed for MEDLINE]Related articles

    7.

    PSI: indexing protein structures for fast similarity search.

    Camoglu O, Kahveci T, Singh AK.

    Bioinformatics. 2003;19 Suppl 1:i81-3.PMID: 12855441 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    MagicMatch--cross-referencing sequence identifiers across databases.

    Smith M, Kunin V, Goldovsky L, Enright AJ, Ouzounis CA.

    Bioinformatics. 2005 Aug 15;21(16):3429-30. Epub 2005 Jun 16.PMID: 15961438 [PubMed - indexed for MEDLINE]Related articlesFree article

    9.

    Fast and accurate database homology search using upper bounds of local alignment scores.

    Itoh M, Goto S, Akutsu T, Kanehisa M.

    Bioinformatics. 2005 Apr 1;21(7):912-21. Epub 2004 Oct 27.PMID: 15509606 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    GENIUS II: a high-throughput database system for linking ORFs in complete genomes to known protein three-dimensional structures.

    Yabuki Y, Mukai Y, Swindells MB, Suwa M.

    Bioinformatics. 2004 Mar 1;20(4):596-8. Epub 2004 Jan 29.PMID: 14751990 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences.

    Othman RM, Deris S, Illias RM.

    J Biomed Inform. 2008 Feb;41(1):65-81. Epub 2007 Jun 27.PMID: 17681495 [PubMed - indexed for MEDLINE]Related articles

    12.

    Using Dali for structural comparison of proteins.

    Holm L, Kääriäinen S, Wilton C, Plewczynski D.

    Curr Protoc Bioinformatics. 2006 Jul;Chapter 5:Unit 5.5.PMID: 18428766 [PubMed - indexed for MEDLINE]Related articles

    13.

    SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters.

    Wang C, Lefkowitz EJ.

    BMC Bioinformatics. 2004 Oct 28;5:171.PMID: 15511296 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Data mining of sequences and 3D structures of allergenic proteins.

    Ivanciuc O, Schein CH, Braun W.

    Bioinformatics. 2002 Oct;18(10):1358-64.PMID: 12376380 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    Identification of putative domain linkers by a neural network - application to a large sequence database.

    Miyazaki S, Kuroda Y, Yokoyama S.

    BMC Bioinformatics. 2006 Jun 27;7:323.PMID: 16800897 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.

    von Grotthuss M, Plewczynski D, Ginalski K, Rychlewski L, Shakhnovich EI.

    BMC Bioinformatics. 2006 Feb 6;7:53.PMID: 16460560 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model.

    Veeramalai M, Ye Y, Godzik A.

    BMC Bioinformatics. 2008 Aug 31;9:358.PMID: 18759993 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    Rapid 3D protein structure database searching using information retrieval techniques.

    Aung Z, Tan KL.

    Bioinformatics. 2004 May 1;20(7):1045-52. Epub 2004 Feb 12.PMID: 14962928 [PubMed - indexed for MEDLINE]Related articlesFree article

    19.

    SCPRED: accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences.

    Kurgan L, Cios K, Chen K.

    BMC Bioinformatics. 2008 May 1;9:226.PMID: 18452616 [PubMed - indexed for MEDLINE]Related articlesFree article

    20.

    ProtRepeatsDB: a database of amino acid repeats in genomes.

    Kalita MK, Ramasamy G, Duraisamy S, Chauhan VS, Gupta D.

    BMC Bioinformatics. 2006 Jul 7;7:336.PMID: 16827924 [PubMed - indexed for MEDLINE]Related articlesFree article

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