PubMed

In silico characterization of immunogenic epitopes presented by HLA-Cw*0401.

Tong JC, Zhang ZH, August JT, Brusic V, Tan TW, Ranganathan S.

Immunome Res. 2007 Aug 20;3:7.PMID: 17705876 [PubMed - in process]Related articlesFree article

Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6-associated pemphigus vulgaris.

Tong JC, Tan TW, Sinha AA, Ranganathan S.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S7.PMID: 17254312 [PubMed - indexed for MEDLINE]Related articlesFree article

Prediction of class I T-cell epitopes: evidence of presence of immunological hot spots inside antigens.

Srinivasan KN, Zhang GL, Khan AM, August JT, Brusic V.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i297-302.PMID: 15262812 [PubMed - indexed for MEDLINE]Related articlesFree article

Integrating in silico and in vitro analysis of peptide binding affinity to HLA-Cw*0102: a bioinformatic approach to the prediction of new epitopes.

Walshe VA, Hattotuwagama CK, Doytchinova IA, Wong M, Macdonald IK, Mulder A, Claas FH, Pellegrino P, Turner J, Williams I, Turnbull EL, Borrow P, Flower DR.

PLoS One. 2009 Nov 30;4(11):e8095.PMID: 19956609 [PubMed - in process]Related articlesFree article

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.

Lin HH, Zhang GL, Tongchusak S, Reinherz EL, Brusic V.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S22.PMID: 19091022 [PubMed - indexed for MEDLINE]Related articlesFree article

Immunological hotspots analyzed by docking simulations: evidence for a general mechanism in pemphigus vulgaris pathology and transformation.

Tong JC, Sinha AA.

BMC Immunol. 2008 Jun 19;9:30.PMID: 18564435 [PubMed - indexed for MEDLINE]Related articlesFree article

Octapeptide but not nonapeptide from HIV-1 p24gag protein upregulates cell surface HLA-C expression.

Kozłowska A, Gorczyca W, Maćkiewicz Z, Wojciechowska I, Kuśnierczyk P.

HIV Med. 2000 Oct;1(4):200-4.PMID: 11737349 [PubMed - indexed for MEDLINE]Related articles

Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides.

Tong JC, Zhang GL, Tan TW, August JT, Brusic V, Ranganathan S.

Bioinformatics. 2006 May 15;22(10):1232-8. Epub 2006 Mar 1.PMID: 16510499 [PubMed - indexed for MEDLINE]Related articlesFree article

Identification and characterization of HLA-B*5401-restricted HIV-1-Nef and Pol-specific CTL epitopes.

Kitano M, Kobayashi N, Kawashima Y, Akahoshi T, Nokihara K, Oka S, Takighuchi M.

Microbes Infect. 2008 Jun;10(7):764-72. Epub 2008 Apr 22.PMID: 18538615 [PubMed - indexed for MEDLINE]Related articles

An unanticipated lack of consensus cytotoxic T lymphocyte epitopes in HIV-1 databases: the contribution of prediction programs.

Schellens IM, Keşmir C, Miedema F, van Baarle D, Borghans JA.

AIDS. 2008 Jan 2;22(1):33-7.PMID: 18090389 [PubMed - indexed for MEDLINE]Related articles

HLA-A2-restricted cytotoxic T lymphocyte epitopes from human heparanase as novel targets for broad-spectrum tumor immunotherapy.

Chen T, Tang XD, Wan Y, Chen L, Yu ST, Xiong Z, Fang DC, Liang GP, Yang SM.

Neoplasia. 2008 Sep;10(9):977-86.PMID: 18714399 [PubMed - indexed for MEDLINE]Related articlesFree article

CTL clones isolated from an HLA-Cw-mismatched bone marrow transplant recipient with acute graft-versus-host disease.

Sugimoto K, Murata M, Terakura S, Naoe T.

J Immunol. 2009 Nov 1;183(9):5991-8. Epub 2009 Oct 7.PMID: 19812210 [PubMed - indexed for MEDLINE]Related articles

Class II HLA-peptide binding prediction using structural principles.

Mohanapriya A, Lulu S, Kayathri R, Kangueane P.

Hum Immunol. 2009 Mar;70(3):159-69. Epub 2009 Jan 31.PMID: 19187794 [PubMed - indexed for MEDLINE]Related articles

CTL response to HIV type 1 subtype C is poorly predicted by known epitope motifs.

Ngandu NG, Bredell H, Gray CM, Williamson C, Seoighe C; HIVNET028 Study Team.

AIDS Res Hum Retroviruses. 2007 Aug;23(8):1033-41.PMID: 17725421 [PubMed - indexed for MEDLINE]Related articles

Identification and characterization of merozoite surface protein 1 epitope.

Singh SP, Mishra BN.

Bioinformation. 2009 Aug 17;4(1):1-5.PMID: 20011145 [PubMed]Related articlesFree article

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction.

Larsen MV, Lundegaard C, Lamberth K, Buus S, Lund O, Nielsen M.

BMC Bioinformatics. 2007 Oct 31;8:424.PMID: 17973982 [PubMed - indexed for MEDLINE]Related articlesFree article

In silico quantitative prediction of peptides binding affinity to human MHC molecule: an intuitive quantitative structure-activity relationship approach.

Tian F, Yang L, Lv F, Yang Q, Zhou P.

Amino Acids. 2009 Mar;36(3):535-54. Epub 2008 Jun 25.PMID: 18575802 [PubMed - indexed for MEDLINE]Related articles

Identification and modification of an HLA-A*0201-restricted cytotoxic T lymphocyte epitope from Ran antigen.

Li F, Yang D, Wang Y, Liu B, Deng Y, Wang L, Shang X, Tong W, Ni B, Wu Y.

Cancer Immunol Immunother. 2009 Dec;58(12):2039-49. Epub 2009 May 9.PMID: 19430788 [PubMed - indexed for MEDLINE]Related articles

HLA-A*0201-restricted CTL epitope of a novel osteosarcoma antigen, papillomavirus binding factor.

Tsukahara T, Kawaguchi S, Torigoe T, Takahashi A, Murase M, Kano M, Wada T, Kaya M, Nagoya S, Yamashita T, Sato N.

J Transl Med. 2009 Jun 12;7:44.PMID: 19523231 [PubMed - indexed for MEDLINE]Related articlesFree article

Two MHC class I molecules associated with elite control of immunodeficiency virus replication, Mamu-B*08 and HLA-B*2705, bind peptides with sequence similarity.

Loffredo JT, Sidney J, Bean AT, Beal DR, Bardet W, Wahl A, Hawkins OE, Piaskowski S, Wilson NA, Hildebrand WH, Watkins DI, Sette A.

J Immunol. 2009 Jun 15;182(12):7763-75.PMID: 19494300 [PubMed - indexed for MEDLINE]Related articles