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Phylogenomic analyses of KCNA gene clusters in vertebrates: why do gene clusters stay intact?

Hoegg S, Meyer A.

BMC Evol Biol. 2007 Aug 15;7:139.PMID: 17697377 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A.

BMC Genomics. 2007 Sep 6;8:312.PMID: 17822543 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni.

Hoegg S, Boore JL, Kuehl JV, Meyer A.

BMC Genomics. 2007 Sep 10;8:317.PMID: 17845724 [PubMed - indexed for MEDLINE]Related articlesFree article

Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family.

Gillis WQ, St John J, Bowerman B, Schneider SQ.

BMC Evol Biol. 2009 Aug 20;9:207.PMID: 19695090 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution and divergence of sodium channel genes in vertebrates.

Lopreato GF, Lu Y, Southwell A, Atkinson NS, Hillis DM, Wilcox TP, Zakon HH.

Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7588-92.PMID: 11416226 [PubMed - indexed for MEDLINE]Related articlesFree article

Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates.

Chakravarti R, Adams JC.

BMC Genomics. 2006 Apr 18;7:83.PMID: 16620374 [PubMed - indexed for MEDLINE]Related articlesFree article

An insight into the phylogenetic history of HOX linked gene families in vertebrates.

Abbasi AA, Grzeschik KH.

BMC Evol Biol. 2007 Nov 30;7:239.PMID: 18053128 [PubMed - indexed for MEDLINE]Related articlesFree article

Molecular evolution of the HoxA cluster in the three major gnathostome lineages.

Chiu CH, Amemiya C, Dewar K, Kim CB, Ruddle FH, Wagner GP.

Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5492-7. Epub 2002 Apr 9.PMID: 11943847 [PubMed - indexed for MEDLINE]Related articlesFree article

Phylogenetic reconstruction of vertebrate Hox cluster duplications.

Bailey WJ, Kim J, Wagner GP, Ruddle FH.

Mol Biol Evol. 1997 Aug;14(8):843-53.PMID: 9254922 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution of pigment synthesis pathways by gene and genome duplication in fish.

Braasch I, Schartl M, Volff JN.

BMC Evol Biol. 2007 May 11;7:74.PMID: 17498288 [PubMed - indexed for MEDLINE]Related articlesFree article

Sequencing and comparative analysis of fugu protocadherin clusters reveal diversity of protocadherin genes among teleosts.

Yu WP, Yew K, Rajasegaran V, Venkatesh B.

BMC Evol Biol. 2007 Mar 30;7:49.PMID: 17394664 [PubMed - indexed for MEDLINE]Related articlesFree article

Evolution of vertebrate genes related to prion and Shadoo proteins--clues from comparative genomic analysis.

Premzl M, Gready JE, Jermiin LS, Simonic T, Marshall Graves JA.

Mol Biol Evol. 2004 Dec;21(12):2210-31. Epub 2004 Sep 1.PMID: 15342797 [PubMed - indexed for MEDLINE]Related articlesFree article

Hox gene clusters in the Indonesian coelacanth, Latimeria menadoensis.

Koh EG, Lam K, Christoffels A, Erdmann MV, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):1084-8. Epub 2003 Jan 23.PMID: 12547909 [PubMed - indexed for MEDLINE]Related articlesFree article

Phylogenetic and chromosomal analyses of multiple gene families syntenic with vertebrate Hox clusters.

Sundström G, Larsson TA, Larhammar D.

BMC Evol Biol. 2008 Sep 19;8:254.PMID: 18803835 [PubMed - indexed for MEDLINE]Related articlesFree article

Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish.

Hoegg S, Brinkmann H, Taylor JS, Meyer A.

J Mol Evol. 2004 Aug;59(2):190-203.PMID: 15486693 [PubMed - indexed for MEDLINE]Related articles

Evolutionary history of the alpha2,8-sialyltransferase (ST8Sia) gene family: tandem duplications in early deuterostomes explain most of the diversity found in the vertebrate ST8Sia genes.

Harduin-Lepers A, Petit D, Mollicone R, Delannoy P, Petit JM, Oriol R.

BMC Evol Biol. 2008 Sep 23;8:258.PMID: 18811928 [PubMed - indexed for MEDLINE]Related articlesFree article

Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes.

Kikugawa K, Katoh K, Kuraku S, Sakurai H, Ishida O, Iwabe N, Miyata T.

BMC Biol. 2004 Mar 11;2:3.PMID: 15070407 [PubMed - indexed for MEDLINE]Related articlesFree article

Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes.

Ravi V, Lam K, Tay BH, Tay A, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16327-32. Epub 2009 Sep 3.PMID: 19805301 [PubMed - indexed for MEDLINE]Related articles

Hox clusters as models for vertebrate genome evolution.

Hoegg S, Meyer A.

Trends Genet. 2005 Aug;21(8):421-4. Review.PMID: 15967537 [PubMed - indexed for MEDLINE]Related articles

Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications.

Prohaska SJ, Fried C, Flamm C, Wagner GP, Stadler PF.

Mol Phylogenet Evol. 2004 May;31(2):581-604.PMID: 15062796 [PubMed - indexed for MEDLINE]Related articles