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    Results: 1 to 20 of 157

    1.

    From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data.

    Opgen-Rhein R, Strimmer K.

    BMC Syst Biol. 2007 Aug 6;1:37.PMID: 17683609 [PubMed - indexed for MEDLINE]Related articlesFree article

    2.

    Weighted lasso in graphical Gaussian modeling for large gene network estimation based on microarray data.

    Shimamura T, Imoto S, Yamaguchi R, Miyano S.

    Genome Inform. 2007;19:142-53.PMID: 18546512 [PubMed - indexed for MEDLINE]Related articlesFree article

    3.

    Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregressive process.

    Opgen-Rhein R, Strimmer K.

    BMC Bioinformatics. 2007 May 3;8 Suppl 2:S3.PMID: 17493252 [PubMed - indexed for MEDLINE]Related articlesFree article

    4.

    SIMoNe: Statistical Inference for MOdular NEtworks.

    Chiquet J, Smith A, Grasseau G, Matias C, Ambroise C.

    Bioinformatics. 2009 Feb 1;25(3):417-8. Epub 2008 Dec 10.PMID: 19073589 [PubMed - indexed for MEDLINE]Related articles

    5.

    A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data.

    Bhadra S, Bhattacharyya C, Chandra NR, Mian IS.

    Algorithms Mol Biol. 2009 Feb 24;4:5.PMID: 19239685 [PubMed]Related articlesFree article

    6.

    Combining classifiers to predict gene function in Arabidopsis thaliana using large-scale gene expression measurements.

    Lan H, Carson R, Provart NJ, Bonner AJ.

    BMC Bioinformatics. 2007 Sep 21;8:358.PMID: 17888165 [PubMed - indexed for MEDLINE]Related articlesFree article

    7.

    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.

    Srinivasasainagendra V, Page GP, Mehta T, Coulibaly I, Loraine AE.

    Plant Physiol. 2008 Jul;147(3):1004-16. Epub 2008 May 8.PMID: 18467456 [PubMed - indexed for MEDLINE]Related articlesFree article

    8.

    Heuristic approach to sparse approximation of gene regulatory networks.

    Andrecut M, Huang S, Kauffman SA.

    J Comput Biol. 2008 Nov;15(9):1173-86.PMID: 18844584 [PubMed - indexed for MEDLINE]Related articles

    9.

    An effective structure learning method for constructing gene networks.

    Chen XW, Anantha G, Wang X.

    Bioinformatics. 2006 Jun 1;22(11):1367-74. Epub 2006 Mar 16.PMID: 16543279 [PubMed - indexed for MEDLINE]Related articlesFree article

    10.

    Integration of metabolic networks and gene expression in virtual reality.

    Yang Y, Engin L, Wurtele ES, Cruz-Neira C, Dickerson JA.

    Bioinformatics. 2005 Sep 15;21(18):3645-50. Epub 2005 Jul 14.PMID: 16020466 [PubMed - indexed for MEDLINE]Related articlesFree article

    11.

    Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks.

    Li H, Gui J.

    Biostatistics. 2006 Apr;7(2):302-17. Epub 2005 Dec 2.PMID: 16326758 [PubMed - indexed for MEDLINE]Related articlesFree article

    12.

    GeneCAT--novel webtools that combine BLAST and co-expression analyses.

    Mutwil M, Obro J, Willats WG, Persson S.

    Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W320-6. Epub 2008 May 14.PMID: 18480120 [PubMed - indexed for MEDLINE]Related articlesFree article

    13.

    Using genetic markers to orient the edges in quantitative trait networks: the NEO software.

    Aten JE, Fuller TF, Lusis AJ, Horvath S.

    BMC Syst Biol. 2008 Apr 15;2:34.PMID: 18412962 [PubMed - indexed for MEDLINE]Related articlesFree article

    14.

    Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana.

    Kusano M, Fukushima A, Arita M, Jonsson P, Moritz T, Kobayashi M, Hayashi N, Tohge T, Saito K.

    BMC Syst Biol. 2007 Nov 21;1:53.PMID: 18028551 [PubMed - indexed for MEDLINE]Related articlesFree article

    15.

    A framework of integrating gene relations from heterogeneous data sources: an experiment on Arabidopsis thaliana.

    Li J, Li X, Su H, Chen H, Galbraith DW.

    Bioinformatics. 2006 Aug 15;22(16):2037-43. Epub 2006 Jul 4.PMID: 16820427 [PubMed - indexed for MEDLINE]Related articlesFree article

    16.

    Discovery of meaningful associations in genomic data using partial correlation coefficients.

    de la Fuente A, Bing N, Hoeschele I, Mendes P.

    Bioinformatics. 2004 Dec 12;20(18):3565-74. Epub 2004 Jul 29.PMID: 15284096 [PubMed - indexed for MEDLINE]Related articlesFree article

    17.

    Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana.

    Kankainen M, Brader G, Törönen P, Palva ET, Holm L.

    Nucleic Acids Res. 2006;34(18):e124. Epub 2006 Sep 26.PMID: 17003050 [PubMed - indexed for MEDLINE]Related articlesFree article

    18.

    GST-PRIME: an algorithm for genome-wide primer design.

    Leister D, Varotto C.

    Methods Mol Biol. 2007;402:141-58. Review.PMID: 17951794 [PubMed - indexed for MEDLINE]Related articles

    19.

    Regularized estimation of large-scale gene association networks using graphical Gaussian models.

    Kramer N, Schafer J, Boulesteix AL.

    BMC Bioinformatics. 2009 Nov 24;10(1):384. [Epub ahead of print]PMID: 19930695 [PubMed - as supplied by publisher]Related articlesFree article

    20.

    An Arabidopsis gene network based on the graphical Gaussian model.

    Ma S, Gong Q, Bohnert HJ.

    Genome Res. 2007 Nov;17(11):1614-25. Epub 2007 Oct 5.PMID: 17921353 [PubMed - indexed for MEDLINE]Related articlesFree article

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