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Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach.

Andorf C, Dobbs D, Honavar V.

BMC Bioinformatics. 2007 Aug 3;8:284.PMID: 17683567 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic discovery of cross-family sequence features associated with protein function.

Brameier M, Haan J, Krings A, MacCallum RM.

BMC Bioinformatics. 2006 Jan 12;7:16.PMID: 16409628 [PubMed - indexed for MEDLINE]Related articlesFree article

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

BMC Bioinformatics. 2008 Jan 25;9:52.PMID: 18221520 [PubMed - indexed for MEDLINE]Related articlesFree article

Improving the Caenorhabditis elegans genome annotation using machine learning.

Rätsch G, Sonnenburg S, Srinivasan J, Witte H, Müller KR, Sommer RJ, Schölkopf B.

PLoS Comput Biol. 2007 Feb 23;3(2):e20. Epub 2006 Dec 21.PMID: 17319737 [PubMed - indexed for MEDLINE]Related articlesFree article

Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.PMID: 15960828 [PubMed - indexed for MEDLINE]Related articlesFree article

Automated protein subfamily identification and classification.

Brown DP, Krishnamurthy N, Sjölander K.

PLoS Comput Biol. 2007 Aug;3(8):e160.PMID: 17708678 [PubMed - indexed for MEDLINE]Related articlesFree article

Information theory applied to the sparse gene ontology annotation network to predict novel gene function.

Tao Y, Sam L, Li J, Friedman C, Lussier YA.

Bioinformatics. 2007 Jul 1;23(13):i529-38.PMID: 17646340 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic annotation of protein function based on family identification.

Abascal F, Valencia A.

Proteins. 2003 Nov 15;53(3):683-92.PMID: 14579359 [PubMed - indexed for MEDLINE]Related articles

Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization.

Chou KC, Shen HB.

Biochem Biophys Res Commun. 2006 Aug 18;347(1):150-7. Epub 2006 Jun 21. Erratum in: Biochem Biophys Res Commun. 2006 Oct 6;348(4):1479. PMID: 16808903 [PubMed - indexed for MEDLINE]Related articles

Engineering proteinase K using machine learning and synthetic genes.

Liao J, Warmuth MK, Govindarajan S, Ness JE, Wang RP, Gustafsson C, Minshull J.

BMC Biotechnol. 2007 Mar 26;7:16.PMID: 17386103 [PubMed - indexed for MEDLINE]Related articlesFree article

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180.PMID: 18400082 [PubMed - indexed for MEDLINE]Related articlesFree article

High-precision high-coverage functional inference from integrated data sources.

Linghu B, Snitkin ES, Holloway DT, Gustafson AM, Xia Y, DeLisi C.

BMC Bioinformatics. 2008 Feb 25;9:119.PMID: 18298847 [PubMed - indexed for MEDLINE]Related articlesFree article

ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization.

Huang WL, Tung CW, Ho SW, Hwang SF, Ho SY.

BMC Bioinformatics. 2008 Feb 1;9:80.PMID: 18241343 [PubMed - indexed for MEDLINE]Related articlesFree article

Learning to translate sequence and structure to function: identifying DNA binding and membrane binding proteins.

Langlois RE, Carson MB, Bhardwaj N, Lu H.

Ann Biomed Eng. 2007 Jun;35(6):1043-52. Epub 2007 Apr 13.PMID: 17436108 [PubMed - indexed for MEDLINE]Related articlesFree article

Functional discrimination of membrane proteins using machine learning techniques.

Gromiha MM, Yabuki Y.

BMC Bioinformatics. 2008 Mar 3;9:135.PMID: 18312695 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic detection of false annotations via binary property clustering.

Kaplan N, Linial M.

BMC Bioinformatics. 2005 Mar 8;6:46.PMID: 15755318 [PubMed - indexed for MEDLINE]Related articlesFree article

Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome.

Buza TJ, McCarthy FM, Burgess SC.

BMC Genomics. 2007 Nov 19;8:425.PMID: 18021451 [PubMed - indexed for MEDLINE]Related articlesFree article

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.PMID: 17620146 [PubMed - indexed for MEDLINE]Related articlesFree article

Rule-based knowledge aggregation for large-scale protein sequence analysis of influenza A viruses.

Miotto O, Tan TW, Brusic V.

BMC Bioinformatics. 2008;9 Suppl 1:S7.PMID: 18315860 [PubMed - indexed for MEDLINE]Related articlesFree article

GOAnnotator: linking protein GO annotations to evidence text.

Couto FM, Silva MJ, Lee V, Dimmer E, Camon E, Apweiler R, Kirsch H, Rebholz-Schuhmann D.

J Biomed Discov Collab. 2006 Dec 20;1:19.PMID: 17181854 [PubMed]Related articlesFree article