PubMed

3'-UTR SIRF: a database for identifying clusters of whort interspersed repeats in 3' untranslated regions.

Andken BB, Lim I, Benson G, Vincent JJ, Ferenc MT, Heinrich B, Jarzylo LA, Man HY, Deshler JO.

BMC Bioinformatics. 2007 Jul 30;8:274.PMID: 17663765 [PubMed - indexed for MEDLINE]Related articlesFree article

Suppression of 15-lipoxygenase synthesis by hnRNP E1 is dependent on repetitive nature of LOX mRNA 3'-UTR control element DICE.

Reimann I, Huth A, Thiele H, Thiele BJ.

J Mol Biol. 2002 Feb 1;315(5):965-74.PMID: 11827469 [PubMed - indexed for MEDLINE]Related articles

UTR dinucleotide simple sequence repeat evolution exhibits recurring patterns including regulatory sequence motif replacements.

Riley DE, Krieger JN.

Gene. 2009 Jan 15;429(1-2):80-6. Epub 2008 Oct 10.PMID: 18955121 [PubMed - indexed for MEDLINE]Related articles

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals.

Xie X, Lu J, Kulbokas EJ, Golub TR, Mootha V, Lindblad-Toh K, Lander ES, Kellis M.

Nature. 2005 Mar 17;434(7031):338-45. Epub 2005 Feb 27.PMID: 15735639 [PubMed - indexed for MEDLINE]Related articles

CompMoby: comparative MobyDick for detection of cis-regulatory motifs.

Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H.

BMC Bioinformatics. 2008 Oct 27;9:455.PMID: 18950538 [PubMed - indexed for MEDLINE]Related articlesFree article

A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAs.

Shalgi R, Lapidot M, Shamir R, Pilpel Y.

Genome Biol. 2005;6(10):R86. Epub 2005 Sep 30.PMID: 16207357 [PubMed - indexed for MEDLINE]Related articlesFree article

Guinea pig p53 mRNA: identification of new elements in coding and untranslated regions and their functional and evolutionary implications.

D'erchia AM, Pesole G, Tullo A, Saccone C, Sbisà E.

Genomics. 1999 May 15;58(1):50-64.PMID: 10331945 [PubMed - indexed for MEDLINE]Related articles

The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions.

An HJ, Lee D, Lee KH, Bhak J.

BMC Genomics. 2004 Dec 21;5(1):97.PMID: 15610565 [PubMed - indexed for MEDLINE]Related articlesFree article

A conserved sequence motif in 3' untranslated regions of ribosomal protein mRNAs in nematodes.

Hajarnavis A, Durbin R.

RNA. 2006 Oct;12(10):1786-9. Epub 2006 Aug 17.PMID: 16917125 [PubMed - indexed for MEDLINE]Related articlesFree article

Satellog: a database for the identification and prioritization of satellite repeats in disease association studies.

Missirlis PI, Mead CL, Butland SL, Ouellette BF, Devon RS, Leavitt BR, Holt RA.

BMC Bioinformatics. 2005 Jun 10;6:145.PMID: 15949044 [PubMed - indexed for MEDLINE]Related articlesFree article

The existence of a putative regulatory element in 3'-untranslated region of proto-oncogene HOX11's mRNA.

Li Y, Jiang ZZ, Chen HX, Leung WK, Sung JJ, Ma WJ.

J Biochem Mol Biol. 2005 Jul 31;38(4):500-6.PMID: 16053719 [PubMed - indexed for MEDLINE]Related articlesFree article

A ubiquitous and conserved signal for RNA localization in chordates.

Betley JN, Frith MC, Graber JH, Choo S, Deshler JO.

Curr Biol. 2002 Oct 15;12(20):1756-61.PMID: 12401170 [PubMed - indexed for MEDLINE]Related articles

Possible Cis-acting signal that could be involved in the localization of different mRNAs in neuronal axons.

Aranda-Abreu GE, Hernández ME, Soto A, Manzo J.

Theor Biol Med Model. 2005 Aug 24;2:33.PMID: 16120223 [PubMed - indexed for MEDLINE]Related articlesFree article

Multiple calmodulin genes in fish.

Friedberg F, Rhoads AR.

Mol Biol Rep. 2002 Dec;29(4):377-82.PMID: 12549824 [PubMed - indexed for MEDLINE]Related articles

New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites.

Lee I, Ajay SS, Yook JI, Kim HS, Hong SH, Kim NH, Dhanasekaran SM, Chinnaiyan AM, Athey BD.

Genome Res. 2009 Jul;19(7):1175-83. Epub 2009 Mar 31.PMID: 19336450 [PubMed - indexed for MEDLINE]Related articlesFree article

Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize.

Kronmiller BA, Wise RP.

Plant Physiol. 2009 Oct;151(2):483-95. Epub 2009 Aug 12.PMID: 19675151 [PubMed - indexed for MEDLINE]Related articlesFree article

Characterization of the 5' and 3' untranslated regions in murine mdm2 mRNAs.

Mendrysa SM, McElwee MK, Perry ME.

Gene. 2001 Feb 7;264(1):139-46.PMID: 11245988 [PubMed - indexed for MEDLINE]Related articles

Data mining of imperfect double-stranded RNA in 3' untranslated regions of eukaryotic mRNAs.

Le SY, Maizel JV Jr.

Biomol Eng. 2007 Sep;24(3):351-9. Epub 2007 Mar 3.PMID: 17482872 [PubMed - indexed for MEDLINE]Related articles

Functional pleiotropy of an intramolecular triplex-forming fragment from the 3'-UTR of the rat Pigr gene.

Fabregat I, Koch KS, Aoki T, Atkinson AE, Dang H, Amosova O, Fresco JR, Schildkraut CL, Leffert HL.

Physiol Genomics. 2001 Mar 8;5(2):53-65.PMID: 11242589 [PubMed - indexed for MEDLINE]Related articles

Transcript profiling by 3'-untranslated region sequencing resolves expression of gene families.

Eveland AL, McCarty DR, Koch KE.

Plant Physiol. 2008 Jan;146(1):32-44. Epub 2007 Nov 16.PMID: 18024554 [PubMed - indexed for MEDLINE]Related articlesFree article