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    Results: 1 to 20 of 124

    1.

    Accuracy and quality of massively parallel DNA pyrosequencing.

    Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM.

    Genome Biol. 2007;8(7):R143.

    PMID:
    17659080
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    2.

    A method for studying protistan diversity using massively parallel sequencing of V9 hypervariable regions of small-subunit ribosomal RNA genes.

    Amaral-Zettler LA, McCliment EA, Ducklow HW, Huse SM.

    PLoS One. 2009 Jul 27;4(7):e6372. Erratum in: PLoS One. 2009;4(12). doi: 10.1371/annotation/50c43133-0df5-4b8b-8975-8cc37d4f2f26.

    PMID:
    19633714
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    3.

    Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates.

    Kunin V, Engelbrektson A, Ochman H, Hugenholtz P.

    Environ Microbiol. 2010 Jan;12(1):118-23. Epub 2009 Aug 27.

    PMID:
    19725865
    [PubMed - indexed for MEDLINE]
    4.

    Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencing.

    Armougom F, Bittar F, Stremler N, Rolain JM, Robert C, Dubus JC, Sarles J, Raoult D, La Scola B.

    Eur J Clin Microbiol Infect Dis. 2009 Sep;28(9):1151-4. Epub 2009 May 16.

    PMID:
    19449045
    [PubMed - indexed for MEDLINE]
    6.

    Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing.

    Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Relman DA, Sogin ML.

    PLoS Genet. 2008 Nov;4(11):e1000255. Epub 2008 Nov 21. Erratum in: PLoS Genet. 2008 Dec;4(12). doi: 10.1371/annotation/3d8a6578-ce56-45aa-bc71-05078355b851. Welch, David Mark [corrected to Mark Welch, David].

    PMID:
    19023400
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    7.

    Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing.

    Gilles A, Meglécz E, Pech N, Ferreira S, Malausa T, Martin JF.

    BMC Genomics. 2011 May 19;12:245.

    PMID:
    21592414
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    8.

    Microdroplet-based PCR enrichment for large-scale targeted sequencing.

    Tewhey R, Warner JB, Nakano M, Libby B, Medkova M, David PH, Kotsopoulos SK, Samuels ML, Hutchison JB, Larson JW, Topol EJ, Weiner MP, Harismendy O, Olson J, Link DR, Frazer KA.

    Nat Biotechnol. 2009 Nov;27(11):1025-31. Epub 2009 Nov 1. Erratum in: Nat Biotechnol. 2010 Feb;28(2):178.

    PMID:
    19881494
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    10.

    The complete genome of an individual by massively parallel DNA sequencing.

    Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, He W, Chen YJ, Makhijani V, Roth GT, Gomes X, Tartaro K, Niazi F, Turcotte CL, Irzyk GP, Lupski JR, Chinault C, Song XZ, Liu Y, Yuan Y, Nazareth L, Qin X, Muzny DM, Margulies M, Weinstock GM, Gibbs RA, Rothberg JM.

    Nature. 2008 Apr 17;452(7189):872-6.

    PMID:
    18421352
    [PubMed - indexed for MEDLINE]
    11.

    High-quality draft assemblies of mammalian genomes from massively parallel sequence data.

    Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, Nicol R, Gnirke A, Nusbaum C, Lander ES, Jaffe DB.

    Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1513-8. Epub 2010 Dec 27.

    PMID:
    21187386
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    12.

    Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates.

    Thornhill DJ, Lajeunesse TC, Santos SR.

    Mol Ecol. 2007 Dec;16(24):5326-40. Epub 2007 Nov 11.

    PMID:
    17995924
    [PubMed - indexed for MEDLINE]
    13.

    Accurate determination of microbial diversity from 454 pyrosequencing data.

    Quince C, Lanzén A, Curtis TP, Davenport RJ, Hall N, Head IM, Read LF, Sloan WT.

    Nat Methods. 2009 Sep;6(9):639-41. Epub 2009 Aug 9.

    PMID:
    19668203
    [PubMed - indexed for MEDLINE]
    14.

    Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.

    Behnke A, Engel M, Christen R, Nebel M, Klein RR, Stoeck T.

    Environ Microbiol. 2011 Feb;13(2):340-9. doi: 10.1111/j.1462-2920.2010.02332.x. Epub 2010 Sep 8.

    PMID:
    21281421
    [PubMed - indexed for MEDLINE]
    15.

    High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.

    Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.

    BMC Genomics. 2008 Jun 30;9:312.

    PMID:
    18590545
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    16.

    Evaluation of human gene variant detection in amplicon pools by the GS-FLX parallel Pyrosequencer.

    Bordoni R, Bonnal R, Rizzi E, Carrera P, Benedetti S, Cremonesi L, Stenirri S, Colombo A, Montrasio C, Bonalumi S, Albertini A, Bernardi LR, Ferrari M, De Bellis G.

    BMC Genomics. 2008 Oct 8;9:464.

    PMID:
    18842124
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    17.

    Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing.

    Qu W, Hashimoto S, Morishita S.

    Genome Res. 2009 Jul;19(7):1309-15. Epub 2009 May 13.

    PMID:
    19439514
    [PubMed - indexed for MEDLINE]
    Free PMC Article
    19.

    Profiling model T-cell metagenomes with short reads.

    Warren RL, Nelson BH, Holt RA.

    Bioinformatics. 2009 Feb 15;25(4):458-64. Epub 2009 Jan 9.

    PMID:
    19136549
    [PubMed - indexed for MEDLINE]
    Free Article
    20.

    Using 454 technology for long-PCR based sequencing of the complete mitochondrial genome from single Haemonchus contortus (Nematoda).

    Jex AR, Hu M, Littlewood DT, Waeschenbach A, Gasser RB.

    BMC Genomics. 2008 Jan 11;9:11.

    PMID:
    18190685
    [PubMed - indexed for MEDLINE]
    Free PMC Article

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